Dr Weizhi Song

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E-mail

weizhi.song@unsw.edu.au

Location

Room 501, Level 5 East, Biological Science Building (D26), UNSW, Kensington 2052

Publications

Journal articles | 2022

Garritano AN; Song W; Thomas T, 2022, 'Carbon fixation pathways across the bacterial and archaeal tree of life', PNAS Nexus, http://dx.doi.org/10.1093/pnasnexus/pgac226

Journal articles | 2022

Liu R; Wei X; Song W; Wang L; Cao J; Wu J; Thomas T; Jin T; Wang Z; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Du J; Fang J, 2022, 'Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats', Microbiome, vol. 10, http://dx.doi.org/10.1186/s40168-022-01263-6

Journal articles | 2022

Song W; Zhang S; Thomas T, 2022, 'MarkerMAG: Linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads', Bioinformatics, vol. 38, pp. 3684 - 3688, http://dx.doi.org/10.1093/bioinformatics/btac398

Journal articles | 2022

Zhang S; Song W; Nothias LF; Couvillion SP; Webster N; Thomas T, 2022, 'Comparative metabolomic analysis reveals shared and unique chemical interactions in sponge holobionts', Microbiome, vol. 10, pp. 22, http://dx.doi.org/10.1186/s40168-021-01220-9

Journal articles | 2021

Dong X; Zhang C; Li W; Weng S; Song W; Li J; Wang Y, 2021, 'Functional diversity of microbial communities in inactive seafloor sulfide deposits', FEMS Microbiology Ecology, vol. 97, http://dx.doi.org/10.1093/femsec/fiab108

Journal articles | 2021

Robbins SJ; Song W; Engelberts JP; Glasl B; Slaby BM; Boyd J; Marangon E; Botté ES; Laffy P; Thomas T; Webster NS, 2021, 'A genomic view of the microbiome of coral reef demosponges', ISME Journal, vol. 15, pp. 1641 - 1654, http://dx.doi.org/10.1038/s41396-020-00876-9

Journal articles | 2021

Song W; Wemheuer B; Steinberg PD; Marzinelli EM; Thomas T, 2021, 'Contribution of horizontal gene transfer to the functionality of microbial biofilm on a macroalgae', ISME Journal, vol. 15, pp. 807 - 817, http://dx.doi.org/10.1038/s41396-020-00815-8

Journal articles | 2020

Liu Q; Song WZ; Zhou YG; Dong XZ; Xin YH, 2020, 'Phenotypic divergence of thermotolerance: Molecular basis and cold adaptive evolution related to intrinsic DNA flexibility of glacier-inhabiting Cryobacterium strains', Environmental Microbiology, vol. 22, pp. 1409 - 1420, http://dx.doi.org/10.1111/1462-2920.14957

Journal articles | 2019

Song W; Thomas T; Edwards RJ, 2019, 'Complete genome sequences of pooled genomic DNA from 10 marine bacteria using PacBio long-read sequencing', Marine Genomics, vol. 48, http://dx.doi.org/10.1016/j.margen.2019.05.002

Journal articles | 2019

Song W; Wemheuer B; Zhang S; Steensen K; Thomas T, 2019, 'MetaCHIP: Community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches', Microbiome, vol. 7, pp. 36, http://dx.doi.org/10.1186/s40168-019-0649-y

Journal articles | 2019

Zhang S; Song W; Wemheuer B; Reveillaud J; Webster N; Thomas T, 2019, 'Comparative genomics reveals ecological and evolutionary insights into sponge-associated Thaumarchaeota', mSystems, vol. 4, http://dx.doi.org/10.1128/mSystems.00288-19

Journal articles | 2017

Song W; Steensen K; Thomas T, 2017, 'HgtSIM: A simulator for horizontal gene transfer (HGT) in microbial communities', PeerJ, vol. 2017, http://dx.doi.org/10.7717/peerj.4015

Journal articles | 2017

Song WZ; Thomas T, 2017, 'Binning-refiner: Improving genome bins through the combination of different binning programs', Bioinformatics, vol. 33, pp. 1873 - 1875, http://dx.doi.org/10.1093/bioinformatics/btx086

Journal articles | 2017

Zhang S; Song W; Yu M; Lin X, 2017, 'Comparative genomics analysis of five Psychrobacter strains isolated from world-wide habitats reveal high intra-genus variations', Extremophiles, vol. 21, pp. 581 - 589, http://dx.doi.org/10.1007/s00792-017-0927-1

Journal articles | 2013

Che S; Song L; Song W; Yang M; Liu G; Lin X, 2013, 'Complete Genome Sequence of Antarctic Bacterium Psychrobacter sp. Strain G.', Genome Announc, vol. 1, http://dx.doi.org/10.1128/genomeA.00725-13

Journal articles | 2013

Che S; Song W; Lin X, 2013, 'Response of heat-shock protein (HSP) genes to temperature and salinity stress in the antarctic psychrotrophic bacterium Psychrobacter sp. G.', Curr Microbiol, vol. 67, pp. 601 - 608, http://dx.doi.org/10.1007/s00284-013-0409-3

Journal articles | 2013

Song W; Lin X; Che S, 2013, 'Identification of regulatory sequences and expression analysis of OmpR gene under different stress conditions in the antarctic bacterium Psychrobacter sp. G.', Curr Microbiol, vol. 66, pp. 259 - 265, http://dx.doi.org/10.1007/s00284-012-0266-5

Journal articles | 2012

Song W; Lin X; Huang X, 2012, 'Characterization and expression analysis of three cold shock protein (CSP) genes under different stress conditions in the Antarctic bacterium Psychrobacter sp. G', Polar Biology, vol. 35, pp. 1515 - 1524, http://dx.doi.org/10.1007/s00300-012-1191-6

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