Associate Professor Matthew Baker

Associate Professor Matthew Baker

Associate Professor

DPhil, Oxford University.

BSc (Hons), Australian National University.

Science
School of Biotech & Biomolecular Science

Dr Matt Baker is a Scientia Associate Professor in the School of Biotechnology and Biomolecular Sciences at the University of New South Wales.

Matt completed his DPhil in Physics at Oxford University as a John Monash Scholar studying the bacterial flagellar motor that makes nearly all bacteria swim. Subsequently Matt investigated protein transport in Oxford's Chemistry Research Laboratory and in the Department of Biochemistry. Upon his return to Australia, Matt focused primarily on how simple subunit interactions govern assembly of complex architectures, including the rotor (NSMB 2016) and filament (eLife 2017) of the bacterial flagellar motor. The next question is how this complexity emerged. To begin addressing this, Matt's nascent group at UNSW looks at how ion selectivity changes using directed evolution (Mol Micro 2019, Front. Microbiol. 2020) to examine the evolutionary landscape that constrains the adaptation of the motor (Science Advances 2022). We then use this knowledge to examine potential applications of the flagellar motor elsewhere (Journal of Bacteriology 2021, Biomicrofluidics 2020).

Our group also investigates force sensitive proteins that in synthetic lipid bilayers (Channels 2019). These are essential at all scales of life, in bacteria to respond to osmotic shock and in mammals in the sense of touch and hearing and are involved in cancer progression and arthritis. In collaboration with Dr Shelley Wickham, we probe membrane dynamics and interactions using novel DNA nanotechnology (Nanoscale 2019, NAR 2021), with the ultimate goal to control membrane communication using de novo DNA nanotechnology.

Matt also has a love of radio: he was a Top 5 Under 40 Scientist in Residence at the ABC in 2015 and has continued since then as the regular science presenter on Nightlife, broadcast on ABC Local across Australia, and by producing content for the Health Report, Science Show, Saturday Extra and Earshot on ABC's Radio National. He is currently a 'Resident Scientist' on Koori FM - Sydney's First Nations Radio station and also on Radio New Zealand's flagship weekend breakfast show Saturday Morning with Kim Hill. He also has applied his data skills to journalism; he was Australia's inaugural Google Newslab Fellow in 2016 when he was embedded at the Sydney Morning Herald. Matt is active in Australia-China relations and has been an delegate and panel chair at the Australia-China Youth Dialogue since 2015.

Currently our group consists of 5 PhD students, 4 postdocs and 2 Hons students working in roughly a fifty-fifty split across flagellar and in vitro lipid/DNA projects. At any stage we welcome applications for PhDs and Hons students. We have recently been fortunate to be funded by the Human Frontier Science Program, so applicants interested in postdoctoral opportunities should get in touch.

A collection of links can be found on Matt's linktree.

Matt teaches in the School of Biotechnology and Biomolecular Science. He is co-convener of 3rd Year synthetic biology (BABS3200) focusing on DNA nanotechnology and directed evolution approaches, and he gives guest lectures into 1st Year Genes, 2nd Year Microbiology, 3rd Year Environmental Microbiology and 3rd Year Microbial Genetics.

Location
D26 L3 Room 301A
  • Book Chapters | 2019
    Cranfield CG; Kloda A; Nikolaev YA; Martinac AD; Ridone P; Bavi N; Bavi O; Petrov E; Battle AR; Nomura T; Rohde PR; Nakayama Y; Rosholm KR; Cox CD; Baker MA; Martinac B, 2019, 'Mechanosensitivity of Ion Channels', in Encyclopedia of Biophysics, Springer Berlin Heidelberg, pp. 1 - 11, http://dx.doi.org/10.1007/978-3-642-35943-9_376-2
    Book Chapters | 2018
    Cranfield CG; Kloda A; Nikolaev YA; Martinac AD; Ridone P; Bavi N; Bavi O; Petrov E; Battle AR; Nomura T; Rohde PR; Nakayama Y; Rosholm KR; Cox CD; Baker MA; Martinac B, 2018, 'Mechanosensitivity of Ion Channels', in Encyclopedia of Biophysics, Springer Berlin Heidelberg, pp. 1 - 11, http://dx.doi.org/10.1007/978-3-642-35943-9_376-1
    Book Chapters | 2017
    Booth TJ; Baker MAB, 2017, 'Nanotechnology: Building and Observing at the Nanometer Scale', in Pharmacognosy: Fundamentals, Applications and Strategy, pp. 633 - 643, http://dx.doi.org/10.1016/B978-0-12-802104-0.00032-9
    Book Chapters | 2016
    Baker MAB, 2016, 'How biophysics may help us understand the flagellar motor of bacteria which cause infections', in Biophysics of Infection, pp. 231 - 243, http://dx.doi.org/10.1007/978-3-319-32189-9_14
  • Journal articles | 2024
    Baker MAB; Kojima S, 2024, 'Structure, function, and biophysics of bacterial motility and the flagellar motor—IUPAB2024 session commentary', Biophysical Reviews, 16, pp. 537 - 538, http://dx.doi.org/10.1007/s12551-024-01243-0
    Journal articles | 2024
    Baker MAB, 2024, 'Meet the IUPAB Councillor: A/Prof Matthew AB Baker (UNSW Sydney, Australia)', Biophysical Reviews, 16, pp. 511 - 512, http://dx.doi.org/10.1007/s12551-024-01240-3
    Journal articles | 2024
    Elahi Y; Baker MAB, 2024, 'Light Control in Microbial Systems', International Journal of Molecular Sciences, 25, http://dx.doi.org/10.3390/ijms25074001
    Journal articles | 2024
    Hamm JN; Liao Y; von Kügelgen A; Dombrowski N; Landers E; Brownlee C; Johansson EMV; Whan RM; Baker MAB; Baum B; Bharat TAM; Duggin IG; Spang A; Cavicchioli R, 2024, 'The parasitic lifestyle of an archaeal symbiont', Nature Communications, 15, http://dx.doi.org/10.1038/s41467-024-49962-y
    Journal articles | 2024
    Mason AF; Wickham SFJ; Baker MAB, 2024, 'DIB-BOT: An Open-Source Hardware Approach for Plate-Integrated Droplet Interface Bilayer Deposition', Advanced Materials Interfaces, http://dx.doi.org/10.1002/admi.202400413
    Journal articles | 2024
    Ridone P; Baker MAB, 2024, 'Hybrid Exb/Mot stators require substitutions distant from the chimeric pore to power flagellar rotation', Journal of Bacteriology, 206, http://dx.doi.org/10.1128/jb.00140-24
    Journal articles | 2023
    Gurung JP; Navvab Kashani M; de Silva CM; Baker MAB, 2023, 'Microbial stir bars: Light-activated rotation of tethered bacterial cells to enhance mixing in stagnant fluids', Biomicrofluidics, 17, http://dx.doi.org/10.1063/5.0144934
    Journal articles | 2023
    Islam MI; Ridone P; Lin A; Michie KA; Matzke NJ; Hochberg G; Baker MAB, 2023, 'Ancestral reconstruction of the MotA stator subunit reveals that conserved residues far from the pore are required to drive flagellar motility', MicroLife, 4, http://dx.doi.org/10.1093/femsml/uqad011
    Journal articles | 2023
    Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2023, 'Computer-Aided Diagnosis of Melanoma Subtypes Using Reflectance Confocal Images', Cancers, 15, http://dx.doi.org/10.3390/cancers15051428
    Journal articles | 2023
    Nandel V; Scadden J; Baker MAB, 2023, 'Ion-Powered Rotary Motors: Where Did They Come from and Where They Are Going?', International Journal of Molecular Sciences, 24, http://dx.doi.org/10.3390/ijms241310601
    Journal articles | 2023
    Ridone P; Winter DL; Baker MAB, 2023, 'Tuning the stator subunit of the flagellar motor with coiled-coil engineering', Protein Science, 32, http://dx.doi.org/10.1002/pro.4811
    Journal articles | 2022
    Baker MAB; Kojima S; Nord AL; Partridge JD, 2022, 'Editorial: Flagellar Motors and Force Sensing in Bacteria', Frontiers in Microbiology, 13, http://dx.doi.org/10.3389/fmicb.2022.833011
    Journal articles | 2022
    Li J; Jamieson WD; Dimitriou P; Xu W; Rohde P; Martinac B; Baker M; Drinkwater BW; Castell OK; Barrow DA, 2022, 'Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-31898-w
    Journal articles | 2022
    Ridone P; Ishida T; Lin A; Humphreys DT; Giannoulatou E; Sowa Y; Baker MAB, 2022, 'The rapid evolution of flagellar ion selectivity in experimental populations of E. coli', Science Advances, 8, http://dx.doi.org/10.1126/sciadv.abq2492
    Journal articles | 2021
    Annabi N; Baker M; Boettiger A; Chakraborty D; Chen Y; Corbett KS; Correia B; Dahlman J; de Oliveira T; Ertuerk A; Yanik MF; Henaff E; Huch M; Iliev ID; Jacobs T; Junca H; Keung A; Kolodkin-Gal I; Krishnaswamy S; Lancaster M; Macosko E; Martínez-Núñez MA; Miura K; Molloy J; Cruz AO; Platt RJ; Posey AD; Shao H; Simunovic M; Slavov N; Takebe T; Vandenberghe LH; Varshney RK; Wang J, 2021, 'Voices of biotech research', Nature biotechnology, 39, pp. 281 - 286, http://dx.doi.org/10.1038/s41587-021-00847-1
    Journal articles | 2021
    Gurung JP; Navvab Kashani M; Agarwal S; Peralta G; Gel M; Baker MAB, 2021, 'Separation and enrichment of sodium-motile bacteria using cost-effective microfluidics', Biomicrofluidics, 15, http://dx.doi.org/10.1063/5.0046941
    Journal articles | 2021
    Islam MI; Bae JH; Ishida T; Ridone P; Lin J; Kelso MJ; Sowa Y; Buckley BJ; Baker MAB, 2021, 'Novel amiloride derivatives that inhibit bacterial motility across multiple strains and stator types', , http://dx.doi.org/10.1101/2021.04.13.439105
    Journal articles | 2021
    Islam MI; Bae JH; Ishida T; Ridone P; Lin J; Kelso MJ; Sowa Y; Buckley BJ; Baker MAB, 2021, 'Novel amiloride derivatives that inhibit bacterial motility across multiple strains and stator types', Journal of Bacteriology, 203, http://dx.doi.org/10.1128/JB.00367-21
    Journal articles | 2021
    Islam MI; Lin A; Lai YW; Matzke NJ; Baker MAB, 2021, 'Corrigendum: Ancestral Sequence Reconstructions of MotB Are Proton-Motile and Require MotA for Motility (Front. Microbiol, (2020), 11, (625837), 10.3389/fmicb.2020.625837)', Frontiers in Microbiology, 12, http://dx.doi.org/10.3389/fmicb.2021.650373
    Journal articles | 2021
    Islam MS; Gaston JP; Baker MAB, 2021, 'Fluorescence approaches for characterizing ion channels in synthetic bilayers', Membranes, 11, http://dx.doi.org/10.3390/membranes11110857
    Journal articles | 2021
    Matzke N; Lin A; Stone M; Baker M, 2021, 'Homology between the flagellar export apparatus and ATP synthetase: evidence from synteny predating the Last Universal Common Ancestor', , http://dx.doi.org/10.1101/2021.01.01.425057
    Journal articles | 2021
    Matzke NJ; Lin A; Stone M; Baker MAB, 2021, 'Flagellar export apparatus and ATP synthetase: Homology evidenced by synteny predating the Last Universal Common Ancestor', BioEssays, 43, http://dx.doi.org/10.1002/bies.202100004
    Journal articles | 2021
    Nieves DJ; Baker MAB, 2021, 'Pushing the super-resolution limit: Recent improvements in microscopy below the diffraction limit', Biochemical Society Transactions, 49, pp. 431 - 439, http://dx.doi.org/10.1042/BST20200746
    Journal articles | 2021
    Ridone P; Ishida T; Lin A; Humphreys D; Giannoulatou E; Sowa Y; Baker M, 2021, 'The rapid evolution of flagellar ion-selectivity in experimental populations ofE. coli', , http://dx.doi.org/10.1101/2021.01.26.427765
    Journal articles | 2021
    Singh JKD; Darley E; Ridone P; Gaston JP; Abbas A; Wickham SFJ; Baker MAB, 2021, 'Binding of DNA origami to lipids: Maximizing yield and switching via strand displacement', Nucleic Acids Research, 49, pp. 10835 - 10850, http://dx.doi.org/10.1093/nar/gkab888
    Journal articles | 2021
    Singh JKD; Darley E; Ridone P; Gaston JP; Abbas A; Wickham SFJ; Baker MAB, 2021, 'Erratum: Binding of DNA origami to lipids: Maximizing yield and switching via strand displacement (Nucleic Acids Res (2021) 49:9 (10835-10850) DOI: 10.1093/nar/gkab888)', Nucleic Acids Research, 49, pp. 12600, http://dx.doi.org/10.1093/nar/gkab1163
    Journal articles | 2021
    Singh JKD; Luu MT; Berengut JF; Abbas A; Baker MAB; Wickham SFJ, 2021, 'Minimizing cholesterol-induced aggregation of membrane-interacting dna origami nanostructures', Membranes, 11, http://dx.doi.org/10.3390/membranes11120950
    Journal articles | 2020
    Daljit Singh JK; Darley E; Ridone P; Gaston J; Abbas A; Wickham SFJ; Baker MAB, 2020, 'Binding of DNA origami to lipids: maximising yield and switching via strand-displacement', , http://dx.doi.org/10.1101/2020.06.01.128686
    Journal articles | 2020
    Gurung J; Kashani MN; Agarwal S; Peralta G; Gel M; Baker MAB, 2020, 'Separation and enrichment of sodium-motile bacteria using cost-effective microfluidics', , http://dx.doi.org/10.1101/2020.11.24.395772
    Journal articles | 2020
    Gurung JP; Gel M; Baker MAB, 2020, 'Microfluidic techniques for separation of bacterial cells via taxis', Microbial Cell, 7, pp. 66 - 79, http://dx.doi.org/10.15698/MIC2020.03.710
    Journal articles | 2020
    Islam MI; Lin A; Lai YW; Matzke NJ; Baker MAB, 2020, 'Ancestral Sequence Reconstructions of MotB Are Proton-Motile and Require MotA for Motility', Frontiers in Microbiology, 11, http://dx.doi.org/10.3389/fmicb.2020.625837
    Journal articles | 2020
    Lai YW; Ridone P; Peralta G; Tanaka MM; Baker MAB, 2020, 'Evolution of the stator elements of rotary prokaryote motors', Journal of Bacteriology, 202, http://dx.doi.org/10.1128/JB.00557-19
    Journal articles | 2019
    Baker M; Nieves D; Hilzenrat G; Berengut J; Gaus K; Lee L, 2019, 'Stoichiometric quantification of spatially dense assemblies with qPAINT', , http://dx.doi.org/10.1101/525345
    Journal articles | 2019
    Baker MAB; Brown AJ, 2019, 'A detour to sterol synthesis', Nature Microbiology, 4, pp. 214 - 215, http://dx.doi.org/10.1038/s41564-018-0347-8
    Journal articles | 2019
    Baker MAB; Nieves DJ; Hilzenrat G; Berengut JF; Gaus K; Lee LK, 2019, 'Stoichiometric quantification of spatially dense assemblies with qPAINT', Nanoscale, 11, pp. 12460 - 12464, http://dx.doi.org/10.1039/c9nr00472f
    Journal articles | 2019
    Baker MAB, 2019, 'ABA/ASB biophysics and medicine session 2018', Biophysical Reviews, 11, pp. 273 - 274, http://dx.doi.org/10.1007/s12551-019-00529-y
    Journal articles | 2019
    Darley E; Singh JKD; Surace NA; Wickham SFJ; Baker MAB, 2019, 'The fusion of lipid and DNA nanotechnology', Genes, 10, http://dx.doi.org/10.3390/genes10121001
    Journal articles | 2019
    Ishida T; Ito R; Clark J; Matzke NJ; Sowa Y; Baker MAB, 2019, 'Sodium-powered stators of the bacterial flagellar motor can generate torque in the presence of phenamil with mutations near the peptidoglycan-binding region', Molecular Microbiology, 111, pp. 1689 - 1699, http://dx.doi.org/10.1111/mmi.14246
    Journal articles | 2019
    Jaggers OB; Ridone P; Martinac B; Baker MAB, 2019, 'Fluorescence microscopy of piezo1 in droplet hydrogel bilayers', Channels, 13, pp. 102 - 109, http://dx.doi.org/10.1080/19336950.2019.1586046
    Journal articles | 2019
    Nieves DJ; Hilzenrat G; Tran J; Yang Z; MacRae HH; Baker MAB; Gooding JJ; Gaus K, 2019, 'tagPAINT: covalent labelling of genetically encoded protein tags for DNA-PAINT imaging', , pp. 604462, http://dx.doi.org/10.1101/604462
    Journal articles | 2019
    Nieves DJ; Hilzenrat G; Tran J; Yang Z; MacRae HH; Baker MAB; Justin Gooding J; Gaus K; Gooding J, 2019, 'TagPaint: Covalent labelling of genetically encoded protein tags for DNA-PAINT imaging', Royal Society Open Science, 6, pp. 191268, http://dx.doi.org/10.1098/rsos.191268
    Journal articles | 2018
    Baker MAB; Tuckwell AJ; Berengut JF; Bath J; Benn F; Duff AP; Whitten AE; Dunn KE; Hynson RM; Turberfield AJ; Lee LK, 2018, 'Dimensions and Global Twist of Single-Layer DNA Origami Measured by Small-Angle X-ray Scattering', ACS Nano, 12, pp. 5791 - 5799, http://dx.doi.org/10.1021/acsnano.8b01669
    Journal articles | 2018
    Ishida T; Ito R; Clark J; Matzke N; Sowa Y; Baker MAB, 2018, 'Sodium-powered stators of the bacterial flagellar motor can generate torque in the presence of phenamil with mutations near the peptidoglycan-binding region', , http://dx.doi.org/10.1101/507533
    Journal articles | 2018
    Jaggers O; Ridone P; Martinac B; Baker M, 2018, 'Fluorescence Microscopy of Piezo1 in Droplet Hydrogel Bilayers', , http://dx.doi.org/10.1101/508176
    Journal articles | 2018
    Lin G; Baker MAB; Hong M; Jin D, 2018, 'The Quest for Optical Multiplexing in Bio-discoveries', Chem, 4, pp. 997 - 1021, http://dx.doi.org/10.1016/j.chempr.2018.01.009
    Journal articles | 2018
    Nichols JA; Herbert Chan HW; Baker MAB, 2018, 'Machine learning: applications of artificial intelligence to imaging and diagnosis.', Biophys Rev, 11, pp. 111 - 118, http://dx.doi.org/10.1007/s12551-018-0449-9
    Journal articles | 2018
    Nieves DJ; Gaus K; Baker MAB, 2018, 'DNA-based super-resolution microscopy: DNA-PAINT', Genes, 9, http://dx.doi.org/10.3390/genes9120621
    Journal articles | 2018
    Zhao Z; Zhao Y; Zhuang XY; Lo WC; Baker MAB; Lo CJ; Bai F, 2018, 'Frequent pauses in Escherichia coli flagella elongation revealed by single cell real-Time fluorescence imaging', Nature Communications, 9, http://dx.doi.org/10.1038/s41467-018-04288-4
    Journal articles | 2017
    Chen M; Zhao Z; Yang J; Peng K; Baker MAB; Bai F; Lo CJ, 2017, 'Length-dependent flagellar growth of vibrio alginolyticus revealed by real time fluorescent imaging', eLife, 6, http://dx.doi.org/10.7554/eLife.22140
    Journal articles | 2017
    Lee LKY; Baker M; Liew CW; Xu S; Berengut J, 2017, 'Artificial synthesis of supramolecular protein structures', ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 73, pp. C784 - C784, http://dx.doi.org/10.1107/S2053273317087903
    Journal articles | 2017
    Rosholm KR; Baker MAB; Ridone P; Nakayama Y; Rohde PR; Cuello LG; Lee LK; Martinac B; Baker M, 2017, 'Activation of the mechanosensitive ion channel MscL by mechanical stimulation of supported Droplet-Hydrogel bilayers', Scientific Reports, 7, pp. 45180, http://dx.doi.org/10.1038/srep45180
    Journal articles | 2016
    Al-Zyoud WA; Hynson RMG; Ganuelas LA; Coster ACF; Duff AP; Baker MAB; Stewart AG; Giannoulatou E; Ho JWK; Gaus K; Liu D; Lee LK; Böcking T; Baker M, 2016, 'Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site', Nucleic Acids Research, 44, pp. 1411 - 1420, http://dx.doi.org/10.1093/nar/gkv1466
    Journal articles | 2016
    Alcock F; Stansfeld PJ; Basit H; Habersetzer J; Baker MA; Palmer T; Wallace MI; Berks BC, 2016, 'Assembling the Tat protein translocase', eLife, 5, http://dx.doi.org/10.7554/eLife.20718
    Journal articles | 2016
    Alcock F; Stansfeld PJ; Basit H; Habersetzer J; Baker MAB; Palmer T; Wallace MI; Berks BC, 2016, 'Assembling the tat protein translocase', eLife, 5, http://dx.doi.org/10.7554/eLife.20718.001
    Journal articles | 2016
    Baker MAB; Hynson RMG; Ganuelas LA; Mohammadi NS; Liew CW; Rey AA; Duff AP; Whitten AE; Jeffries CM; Delalez NJ; Morimoto YV; Stock D; Armitage JP; Turberfield AJ; Namba K; Berry RM; Lee LK, 2016, 'Domain-swap polymerization drives the self-assembly of the bacterial flagellar motor', Nature Structural and Molecular Biology, 23, pp. 197 - 203, http://dx.doi.org/10.1038/nsmb.3172
    Journal articles | 2016
    Ma Q; Sowa Y; Baker MAB; Bai F, 2016, 'Bacterial Flagellar Motor Switch in Response to CheY-P Regulation and Motor Structural Alterations', Biophysical Journal, 110, pp. 1411 - 1420, http://dx.doi.org/10.1016/j.bpj.2016.02.023
    Journal articles | 2016
    Pu Y; Zhao Z; Li Y; Zou J; Ma Q; Zhao Y; Ke Y; Zhu Y; Chen H; Baker MAB; Ge H; Sun Y; Xie XS; Bai F, 2016, 'Enhanced Efflux Activity Facilitates Drug Tolerance in Dormant Bacterial Cells', Molecular Cell, 62, pp. 284 - 294, http://dx.doi.org/10.1016/j.molcel.2016.03.035
    Journal articles | 2015
    Xue R; Ma Q; Baker MAB; Bai F; Baker M, 2015, 'A Delicate Nanoscale Motor Made by Nature—The Bacterial Flagellar Motor', Advanced Science, 2, pp. 1500129, http://dx.doi.org/10.1002/advs.201500129
    Journal articles | 2014
    Baker MAB; Rojko N; Cronin B; Anderluh G; Wallace MI, 2014, 'Photobleaching reveals heterogeneous stoichiometry for equinatoxin II oligomers', ChemBioChem, 16, pp. 2139 - 2145, http://dx.doi.org/10.1002/cbic.201300799
    Journal articles | 2014
    Rojko N; Cronin B; Danial JSH; Baker MAB; Anderluh G; Wallace MI, 2014, 'Imaging the lipid-phase-dependent pore formation of equinatoxin II in droplet interface bilayers', Biophysical Journal, 106, pp. 1630 - 1637, http://dx.doi.org/10.1016/j.bpj.2013.11.4507
    Journal articles | 2013
    Alcock F; Baker MAB; Greene NP; Palmer T; Wallace MI; Berks BC, 2013, 'Live cell imaging shows reversible assembly of the TatA component of the twin-arginine protein transport system.', PNAS, 110, pp. E3650 - E3659, http://dx.doi.org/10.1073/pnas.1306738110
    Journal articles | 2013
    Inoue Y; Baker MAB; Fukuoka H; Takahashi H; Berry RM; Ishijima A, 2013, 'Temperature Dependences of Torque Generation and Membrane Voltage in the Bacterial Flagellar Motor', Biophysical Journal, 105, pp. 2801 - 2810, http://dx.doi.org/10.1016/j.bpj.2013.09.061
    Journal articles | 2012
    Panchompoo J; Aldous L; Baker M; Wallace MI; Compton RG, 2012, 'One-step synthesis of fluorescein modified nano-carbon for Pd(ii) detection via fluorescence quenching', Analyst, 137, pp. 2054 - 2062, http://dx.doi.org/10.1039/c2an16261j
    Journal articles | 2011
    Baker MAB; Inoue Y; Takeda K; Ishijima A; Berry RM, 2011, 'Two methods of temperature control for single-molecule measurements.', European biophysics journal : EBJ, 40, pp. 651 - 660, http://dx.doi.org/10.1007/s00249-010-0667-y
    Journal articles | 2010
    Baker MA; Inoue Y; Lo C-J; Ishijima A; Berry R, 2010, 'Response of the Bacterial Flagellar Motor to Controlled Temperature Change', BIOPHYSICAL JOURNAL, 98, pp. 159A - 159A, http://dx.doi.org/10.1016/j.bpj.2009.12.856
    Journal articles | 2009
    Baker MA, 2009, 'Probing the Bacterial Flagellar Motor using Temperature Control', Biophysical Journal, 96, pp. 519a - 519a, http://dx.doi.org/10.1016/j.bpj.2008.12.2672
    Journal articles | 2009
    Baker MAB; Berry RM, 2009, 'An Introduction to the physics of the bacterial flagellar motor: a nanoscale rotary electric motor', Contemporary Physics, 50, pp. 617 - 632, http://dx.doi.org/10.1080/00107510903090553
    Journal articles | 2007
    Carberry DM; Baker MAB; Wang GM; Sevick EM; Evans DJ, 2007, 'An optical trap experiment to demonstrate fluctuation theorems in viscoelastic media', Journal of Optics A: Pure and Applied Optics, 9, pp. 204 - 204
  • Preprints | 2024
    Brown H; Islam MI; Ruan J; Baker M; Ithurbide S; Duggin I, 2024, CetZ1-dependent polar assembly of the motility machinery in haloarchaea, http://dx.doi.org/10.1101/2024.05.02.592137
    Preprints | 2024
    Gurung JP; Ridone P; Biquet-Bisquert A; Bryant G; Pedaci F; Nord AL; Baker MAB, 2024, Insertion of fluorescent proteins near the plug domain of MotB generates functional stator complex, http://dx.doi.org/10.1101/2024.09.27.615325
    Preprints | 2024
    Mason A; Wickham SFJ; Baker MAB, 2024, DIB-BOT: An open-source hardware approach for high throughput droplet interface bilayer deposition, http://dx.doi.org/10.1101/2024.01.26.577347
    Preprints | 2024
    Philip JS; Grewal S; Scadden J; Puente-Lelievre C; Matzke NJ; McNally L; Baker MAB, 2024, Easy come, easier go: mapping the loss of flagellar motility across the tree of life, http://dx.doi.org/10.1101/2024.12.05.626484
    Preprints | 2024
    Puente-Lelievre C; Ridone P; Douglas J; Amritkar K; Kaçar B; Baker M; Matzke N, 2024, Molecular and structural innovations of the stator motor complex at the dawn of flagellar motility, http://dx.doi.org/10.1101/2024.07.22.604496
    Preprints | 2024
    Ridone P; Baker MAB, 2024, Hybrid Exb/Mot stators require substitutions distant from the chimeric pore to power flagellar rotation, http://dx.doi.org/10.1101/2024.03.12.584617
    Preprints | 2024
    Scadden J; Pandit D; Ridone P; Sowa Y; Baker MAB, 2024, Rescue of bacterial motility using two and three-species FliC chimeras, http://dx.doi.org/10.1101/2024.12.02.626473
    Preprints | 2023
    Gurung J; Kashani M; de Silva C; Baker MAB, 2023, Microbial stir bars: light-activated rotation of tethered bacterial cells to enhance mixing in stagnant fluids, http://dx.doi.org/10.1101/2023.01.26.525760
    Preprints | 2023
    Hamm J; Liao Y; Kügelgen AV; Dombrowski N; Landers E; Brownlee C; Johansson E; Whan R; Baker M; Baum B; Bharat T; Duggin I; Spang A; Cavicchioli R, 2023, The parasitic lifestyle of an archaeal symbiont, http://dx.doi.org/10.1101/2023.02.24.529834
    Preprints | 2023
    Puente-Lelievre C; Malik A; Douglas J; Ascher D; Baker M; Allison J; Poole A; Lundin D; Fullmer M; Bouckert R; Kim H; Steinegger M; Matzke N, 2023, Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone, http://dx.doi.org/10.1101/2023.12.12.571181
    Preprints | 2023
    Ridone P; Winter D; Baker M, 2023, Tuning the stator subunit of the flagellar motor with coiled-coil engineering, http://dx.doi.org/10.1101/2023.03.05.530362
    Preprints | 2022
    Islam MI; Ridone P; Lin A; Michie K; Matzke N; Hochberg G; Baker MAB, 2022, Ancestral reconstruction of the MotA stator subunit reveals that conserved residues far from the pore are required to drive flagellar motility, http://dx.doi.org/10.1101/2022.10.17.512626
    Preprints | 2022
    Li J; Jamieson W; Dimitriou P; Xu W; Rohde P; Martinac B; Baker M; Drinkwater B; Castell O; Barrow D, 2022, Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation, http://dx.doi.org/10.1101/2022.01.13.476178
    Preprints | 2022
    Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), , http://dx.doi.org/10.1101/2022.05.10.491423
    Recorded / Rendered Creative Works | 2017
    Baker M, 2017, The Full Cost of Fraud, Radio National, ABC, Radio, Published: 04 September 2017, Duration: 00:26:30, Recorded / Rendered Creative Works, http://www.abc.net.au/radionational/programs/earshot/the-full-cost-of-fraud/8805412
    Conference Papers | 2017
    Baker MA; Tuckwell AJ; Berengut JF; Bath J; Benn F; Duff AP; Whitten AE; Dunn KE; Hynson RM; Turberfield AJ; Lee LK, 2017, 'DNA origami dimensions and structure measured by solution X-ray scattering', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, SCOTLAND, British Biophys Soc, Edinburgh, pp. S137 - S137, presented at 19th IUPAB Congress / 11th EBSA Congress, SCOTLAND, British Biophys Soc, Edinburgh, 16 July 2017 - 20 July 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000416406200296&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2017
    Hertel S; Liew CW; Baker MA; Lee LK, 2017, 'Artificial assembly of the bacterial flagella motor protein FliG on DNA nanostructures', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, SCOTLAND, British Biophys Soc, Edinburgh, pp. S345 - S345, presented at 19th IUPAB Congress / 11th EBSA Congress, SCOTLAND, British Biophys Soc, Edinburgh, 16 July 2017 - 20 July 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000416406202012&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Recorded / Rendered Creative Works | 2016
    Baker MAB; Etherington B, 2016, Roast or Fry: Dancehall in the Yards of Kingston, Radio National, Earshot, Radio, Published: 07 June 2016, Duration: 00:26:30, Recorded / Rendered Creative Works, http://www.abc.net.au/radionational/programs/earshot/roast-or-fry:-dancehall-in-the-yards-of-kingston/7444230
    Conference Papers | 2013
    Baker MA; Alcock F; Greene NP; Palmer T; Wallace MI; Berks BC, 2013, 'Reversible assembly of twin-arginine protein translocation sites', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, PORTUGAL, Lisbon, pp. S78 - S78, presented at 9th European-Biophysical-Societies-Association Congress, PORTUGAL, Lisbon, 13 July 2013 - 17 July 2013, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000330215300163&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

  • International Funding:
    • Human Frontiers Science Programme RGY0072.
    • US Navy Office of Naval Research Program Grant
  • Category 1 Funding:
    • Australian Research Council DP190100497.
    • Australian Research Council DP210101892.
  • Industry Funding:
    • CSIRO Synthetic Biology Platform Project Grant 2018-2021.
    • Medical Advances Without Animals – 2020-2021.

2023 Promoted to Associate Professor

2021-24 Elected Councillor, International Union of Pure and Applied Biophysics

2020-21 President, Australian Society of Biophysics.

2019 promoted to Senior Lecturer.

2018  UNSW Faculty of Science – Dean’s Award for Excellence in Science Communication

2018  Scientia Research Fellowship – UNSW Fellowship

2017  Young 'Tall Poppy' Award, NSW – Australian Instute of Policy and Science

2016  Google News Lab Fellowship – Sole Australian Fellow.

2015  Australia-China Youth Dialogue Delegate

2015  Top 5 Under 40 Winner – ABC/UNSW fellowship to ‘discover Australia’s new generation of science thinkers’

2015  Robert M. Macnab Memorial Travel Award to speak at BLAST XIII in Tucson, Arizona

2009:  Nicholas Kurti Prize for Best 3rd Year DPhil Student Physics, University of Oxford.

2009: Nesta Famelab UK Finalist (http://www.famelab.org).

2005-2009   John Monash Scholar (http://www.monashawards.org). PhD Fellowship.

2001-2004   ANU National Undergraduate Scholarship.

For more up to date biographies of my team and our current research projects please consult my lab website.

Some of our recent research has featured on the UNSW newsroom:

  1. How to program DNA robots to poke and prod cell membranes.
  2. Bacteria use ancient mechanisms to self-repair.

I also have written editorials (at the ABC and elsewhere) in the past on the role of the flagellar motor in understanding the evolution of complexity.

 

 

 

My Research Supervision

Vibhuti Nandel

Janelle Ramos

James Gaston

Jyoti Gurung

Md Imtiazul Islam