Doctor Francesca Di Giallonardo

Doctor Francesca Di Giallonardo

Postdoctoral Fellow

Mar 2014        Ph.D. Microbiology & Immunology, University of Zurich, Switzerland

Mar 2008        Master of Science in Biology, Human Biology, University of Zurich, Zurich, Switzerland

 

 

Medicine & Health
The Kirby Institute

I am a trained virologist and expert in molecular biology with major research interests in evolutionary biology, disease emergence and genomics. My work includes determining the evolutionary dynamics of different viral pathogens and revealing the association between aspects of viral phenotype and viral emergence. Currently, I am most interested in the evolutionary history of HIV-1 in Australia and what factors most characterise the transmission dynamics within specific geographic areas and individual risk populations

 

I obtained my PhD from the University of Zurich in Switzerland. My thesis focused on the application of next-generation technologies (NGS) to investigate key aspects of HIV-1 diversity within infected patients. Upon completion of my PhD, I obtained the Early Postdoc Mobility Fellowship from the SNFS that enabled me to move to Australia and uptake a position as postdoctoral researcher under the supervision of Prof. Edward Holmes at the University of Sydney. There, I worked on a broad range of projects covering pathogen diversity, epidemiology and biological control of feral animals. I joined the Kirby Institute in January 2018 after receiving the Advanced Postdoc Mobility Fellowship from the Swiss National Science Foundation (SNFS).

 

Google Scholar 

https://scholar.google.com/citations?user=Qyoni6oAAAAJ&hl=en&oi=ao

 

Phone
+61 2 9385 0465
Location
Level 5, Wallace Wurth Building UNSW SYDNEY NSW 2052
  • Journal articles | 2024
    King JM; Giallonardo FD; Shaik A; McGregor S; Yeung JYK; Sivaruban T; Lee FJ; Cunningham P; Dwyer DE; Nigro SJ; Grulich AE; Kelleher AD, 2024, 'Low HIV drug resistance prevalence among recently diagnosed HIV-positive men who have sex with men in a setting of high PrEP use', Journal of the International AIDS Society, 27, http://dx.doi.org/10.1002/jia2.26308
    Journal articles | 2024
    Sudhakar A; Wilson D; Devi R; Balak DA; Singh J; Tuidraki K; Gaunavinaka L; Turuva W; Naivalu T; Lawley B; Tay JH; Di Giallonardo F; Duchene S; Geoghegan JL, 2024, 'Molecular epidemiology of the HIV-1 epidemic in Fiji', npj Viruses, 2, http://dx.doi.org/10.1038/s44298-024-00019-3
    Journal articles | 2023
    Bowden-Reid E; Ledger S; Zhang Y; Di Giallonardo F; Aggarwal A; Stella AO; Akerman A; Milogiannakis V; Walker G; Rawlinson W; Turville S; Kelleher AD; Ahlenstiel C, 2023, 'Novel siRNA therapeutics demonstrate multi-variant efficacy against SARS-CoV-2', Antiviral Research, 217, http://dx.doi.org/10.1016/j.antiviral.2023.105677
    Journal articles | 2023
    Sghaier S; Sailleau C; Marcacci M; Thabet S; Curini V; Ben Hassine T; Teodori L; Portanti O; Hammami S; Jurisic L; Spedicato M; Postic L; Gazani I; Ben Osman R; Zientara S; Bréard E; Calistri P; Richt JA; Holmes EC; Savini G; Di Giallonardo F; Lorusso A, 2023, 'Epizootic Haemorrhagic Disease Virus Serotype 8 in Tunisia, 2021', Viruses, 15, http://dx.doi.org/10.3390/v15010016
    Journal articles | 2022
    Amato L; Candeloro L; Di Girolamo A; Savini L; Puglia I; Marcacci M; Caporale M; Mangone I; Cammà C; Conte A; Torzi G; Mancinelli A; Di Giallonardo F; Lorusso A; Migliorati G; Schael T; D'Alterio N; Calistri P, 2022, 'Epidemiological and genomic findings of the first documented Italian outbreak of SARS-CoV-2 Alpha variant of concern', Epidemics, 39, pp. 100578, http://dx.doi.org/10.1016/j.epidem.2022.100578
    Journal articles | 2022
    Curini V; Marcacci M; Abid S; Ouederni M; Elmoussi A; Charaa L; Achour W; Ouhichi R; Maazaoui L; Di Pasquale A; Elghord H; Gzara A; Ripani A; Di Giallonardo F; Cammà C; Lorusso A; Boubaker IBB, 2022, 'Full Genome Characterization of Respiratory Syncytial Virus Causing a Fatal Infection in an Immunocompromised Patient in Tunisia', Pathogens, 11, http://dx.doi.org/10.3390/pathogens11070758
    Journal articles | 2022
    Molini U; Curini V; Jacobs E; Tongo E; Berjaoui S; Hemberger MY; Puglia I; Jago M; Khaiseb S; Cattoli G; Dundon WG; Lorusso A; Di Giallonardo F, 2022, 'First influenza D virus full-genome sequence retrieved from livestock in Namibia, Africa', Acta Tropica, 232, http://dx.doi.org/10.1016/j.actatropica.2022.106482
    Journal articles | 2022
    Spedicato M; Compagni ED; Caporale M; Teodori L; Leone A; Ancora M; Mangone I; Perletta F; Portanti O; Di Giallonardo F; Bonfini B; Savini G; Lorusso A, 2022, 'Reemergence of an atypical bluetongue virus strain in goats, Sardinia, Italy', Research in Veterinary Science, 151, pp. 36 - 41, http://dx.doi.org/10.1016/j.rvsc.2022.07.003
    Journal articles | 2021
    Amato L; Jurisic L; Puglia I; Di Lollo V; Curini V; Torzi G; Di Girolamo A; Mangone I; Mancinelli A; Decaro N; Calistri P; Di Giallonardo F; Lorusso A; D’Alterio N, 2021, 'Multiple detection and spread of novel strains of the SARS-CoV-2 B.1.177 (B.1.177.75) lineage that test negative by a commercially available nucleocapsid gene real-time RT-PCR', Emerging Microbes and Infections, 10, pp. 1148 - 1155, http://dx.doi.org/10.1080/22221751.2021.1933609
    Journal articles | 2021
    Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Selvey C; Nigro SJ; Fraser N; Price K; Holden J; Lee FJ; Dwyer DE; Bavinton BR; Geoghegan JL; Grulich AE; Kelleher AD; Guy R; Prestage G; Zablotska I; Holden J; Duck T; Cooper C; Holt M; de Wit J; Kaldor J; Wilson D; Brotherton A; Cooper DA; Crooks L; Whittaker B; Callander D; Madeddu D; Schmidt HM; Telfer B; Boyd M; McGill S; Patel P; Power C; Gordon T; Feeney L; Bath K; Mackie B, 2021, 'Subtype-specific differences in transmission cluster dynamics of HIV-1 B and CRF01_AE in New South Wales, Australia', Journal of the International AIDS Society, 24, pp. e25655, http://dx.doi.org/10.1002/jia2.25655
    Journal articles | 2021
    Di Giallonardo F; Puglia I; Curini V; Cammà C; Mangone I; Calistri P; Cobbin JCA; Holmes EC; Lorusso A, 2021, 'Emergence and spread of sars-cov-2 lineages b.1.1.7 and p.1 in Italy', Viruses, 13, http://dx.doi.org/10.3390/v13050794
    Journal articles | 2021
    Featherstone LA; Di Giallonardo F; Holmes EC; Vaughan TG; Duchêne S, 2021, 'Infectious disease phylodynamics with occurrence data', Methods in Ecology and Evolution, 12, pp. 1498 - 1507, http://dx.doi.org/10.1111/2041-210X.13620
    Journal articles | 2021
    Geoghegan JL; Di Giallonardo F; Wille M; Ortiz-Baez AS; Costa VA; Ghaly T; Mifsud JCO; Turnbull OMH; Bellwood DR; Williamson JE; Holmes EC, 2021, 'Virome composition in marine fish revealed by meta-transcriptomics', Virus Evolution, 7, http://dx.doi.org/10.1093/ve/veab005
    Journal articles | 2021
    Geoghegan JL; Giallonardo FD; Wille M; Ortiz-Baez AS; Costa VA; Ghaly T; Mifsud JCO; Turnbull OMH; Bellwood DR; Williamson JE; Holmes EC, 2021, 'Erratum: Virome composition in marine fish revealed by meta-transcriptomics (Virus Evolution (2021) 7:1 (veab005) DOI: 10.1093/ve/veab005)', Virus Evolution, 7, http://dx.doi.org/10.1093/ve/veab035
    Journal articles | 2021
    Kok YL; Vongrad V; Chaudron SE; Shilaih M; Leemann C; Neumann K; Kusejko K; Di Giallonardo F; Kuster H; Braun DL; Kouyos RD; Günthard HF; Metzner KJ, 2021, 'HIV-1 integration sites in CD4+ T cells during primary, chronic, and late presentation of HIV-1 infection', JCI Insight, 6, http://dx.doi.org/10.1172/jci.insight.143940
    Journal articles | 2020
    Adikari TN; Di Giallonardo F; Leung P; Grifoni A; Sette A; Weiskopf D; Bull RA; Luciani F, 2020, 'Conserved epitopes with high HLA-I population coverage are targets of CD8+ T cells associated with high IFN-γ responses against all dengue virus serotypes', Scientific Reports, 10, http://dx.doi.org/10.1038/s41598-020-77565-2
    Journal articles | 2020
    Campbell SJ; Ashley W; Gil-Fernandez M; Newsome TM; Di Giallonardo F; Ortiz-Baez AS; Mahar JE; Towerton AL; Gillings M; Holmes EC; Carthey AJR; Geoghegan JL, 2020, 'Red fox viromes in urban and rural landscapes', Virus Evolution, 6, http://dx.doi.org/10.1093/ve/veaa065
    Journal articles | 2020
    Di Giallonardo F; Duchene S; Puglia I; Curini V; Profeta F; Cammà C; Marcacci M; Calistri P; Holmes EC; Lorusso A, 2020, 'Genomic epidemiology of the first wave of sars-cov-2 in Italy', Viruses, 12, http://dx.doi.org/10.3390/v12121438
    Journal articles | 2020
    Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Selvey C; Nigro SJ; Fraser N; Price K; Holden J; Lee FJ; Dwyer DE; Bavinton BR; Grulich AE; Kelleher AD, 2020, 'Increased hiv subtype diversity reflecting demographic changes in the hiv epidemic in new south wales, australia', Viruses, 12, pp. 1402, http://dx.doi.org/10.3390/v12121402
    Journal articles | 2019
    Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Telfer B; Cooper C; Price K; Selvey C; Holden J; Bachmann N; Lee FJ; Dwyer DE; Duchêne S; Holmes EC; Grulich AE; Kelleher AD; Prestage G; de Wit J, 2019, 'Limited sustained local transmission of HIV-1 CRF01_AE in New South Wales, Australia', Viruses, 11, pp. 482, http://dx.doi.org/10.3390/v11050482
    Journal articles | 2019
    Kerr PJ; Eden JS; Di Giallonardo F; Peacock D; Liu J; Strive T; Read AF; Holmes EC, 2019, 'Punctuated evolution of myxoma virus: Rapid and disjunct evolution of a recent viral lineage in Australia', Journal of Virology, 93, http://dx.doi.org/10.1128/JVI.01994-18
    Journal articles | 2019
    Koh C; Audsley MD; Di Giallonardo F; Kerton EJ; Young PR; Holmes EC; McGraw EA, 2019, 'Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture', Virus Evolution, 5, http://dx.doi.org/10.1093/ve/vez012
    Journal articles | 2018
    Di Giallonardo F; Audsley MD; Shi M; Young PR; McGraw EA; Holmes EC, 2018, 'Complete genome of Aedes aegypti anphevirus in the Aag2 mosquito cell line', Journal of General Virology, 99, pp. 832 - 836, http://dx.doi.org/10.1099/jgv.0.001079
    Journal articles | 2018
    Di Giallonardo F; Geoghegan JL; Cousins K; Shi M; Williamson JE; Holmes EC, 2018, 'Hidden diversity and evolution of viruses in market fish', Virus Evolution, 4, pp. vey031 - vey031, http://dx.doi.org/10.1093/ve/vey031
    Journal articles | 2018
    Di Giallonardo F; Kok J; Fernandez M; Carter I; Geoghegan JL; Dwyer DE; Holmes EC; Eden JS, 2018, 'Evolution of human respiratory syncytial virus (RSV) over multiple seasons in New South Wales, Australia', Viruses, 10, http://dx.doi.org/10.3390/v10090476
    Journal articles | 2018
    Pinto A; Di Giallonardo F; Keen P; Cooper C; Telfer B; Cooper D; Grulich A; Kelleher A, 2018, 'A10 Using the molecular epidemiology of HIV transmission in New South Wales to inform public health response: Assessing the representativeness of linked phylogenetic data', Virus Evolution, 4, http://dx.doi.org/10.1093/ve/vey010.009
    Journal articles | 2018
    Pinto AN; Hawke K; Castley A; Chibo D; Giallonardo FD; Cooper C; Sawleshwarkar S; Kelleher A; Dwyer DE, 2018, 'HIV-1 subtype diversity, transmitted drug resistance and phylogenetics in Australia', Future Virology, 13, pp. 575 - 584, http://dx.doi.org/10.2217/fvl-2018-0031
    Journal articles | 2017
    Giallonardo FD; Schlub TE; Shi M; Holmes EC, 2017, 'Dinucleotide composition in animal RNA viruses is shaped more by virus family than by host species', Journal of Virology, 91, http://dx.doi.org/10.1128/JVI.02381-16
    Journal articles | 2017
    Wilson JAC; Prow NA; Schroder WA; Ellis JJ; Cumming HE; Gearing LJ; Poo YS; Taylor A; Hertzog PJ; Di Giallonardo F; Hueston L; Le Grand R; Tang B; Le TT; Gardner J; Mahalingam S; Roques P; Bird PI; Suhrbier A, 2017, 'RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation', PLoS Pathogens, 13, http://dx.doi.org/10.1371/journal.ppat.1006155
    Journal articles | 2016
    Dill JA; Camus AC; Leary JH; Di Giallonardo F; Holmes EC; Nga TFF, 2016, 'Distinct viral lineages from fish and amphibians reveal the complex evolutionary history of hepadnaviruses', Journal of Virology, 90, pp. 7920 - 7933, http://dx.doi.org/10.1128/JVI.00832-16
    Journal articles | 2016
    Duchene S; Di Giallonardo F; Holmes EC, 2016, 'Substitution model adequacy and assessing the reliability of estimates of virus evolutionary rates and time scales', Molecular Biology and Evolution, 33, pp. 255 - 267, http://dx.doi.org/10.1093/molbev/msv207
    Journal articles | 2016
    Duchêne S; Duchêne DA; Di Giallonardo F; Eden JS; Geoghegan JL; Holt KE; Ho SYW; Holmes EC, 2016, 'Cross-validation to select Bayesian hierarchical models in phylogenetics', BMC Evolutionary Biology, 16, http://dx.doi.org/10.1186/s12862-016-0688-y
    Journal articles | 2016
    Geoghegan JL; Senior AM; Giallonardo FD; Holmes EC, 2016, 'Virological factors that increase the transmissibility of emerging human viruses', Proceedings of the National Academy of Sciences of the United States of America, 113, pp. 4170 - 4175, http://dx.doi.org/10.1073/pnas.1521582113
    Journal articles | 2016
    Kok YL; Vongrad V; Shilaih M; Di Giallonardo F; Kuster H; Kouyos R; Günthard HF; Metzner KJ, 2016, 'Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4 + T cells', Scientific Reports, 6, http://dx.doi.org/10.1038/srep24157
    Journal articles | 2016
    Noguera-Julian M; Cozzi-Lepri A; Di Giallonardo F; Schuurman R; Däumer M; Aitken S; Ceccherini-Silberstein F; D'Arminio Monforte A; Geretti AM; Booth CL; Kaiser R; Michalik C; Jansen K; Masquelier B; Bellecave P; Kouyos RD; Castro E; Furrer H; Schultze A; Günthard HF; Brun-Vezinet F; Metzner KJ; Paredes R; Schuurman R; Günthard H; Reqaeui F; Kaiser R; Brockmeyer N, 2016, 'Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants', Clinical Microbiology and Infection, 22, pp. 191 - 200, http://dx.doi.org/10.1016/j.cmi.2015.10.004
    Journal articles | 2016
    Seifert D; Di Giallonardo F; Töpfer A; Singer J; Schmutz S; Günthard HF; Beerenwinkel N; Metzner KJ, 2016, 'A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations', Journal of Molecular Biology, 428, pp. 238 - 250, http://dx.doi.org/10.1016/j.jmb.2015.12.012
    Journal articles | 2016
    St. John EP; Simen BB; Turenchalk GS; Braverman MS; Abbate I; Aerssens J; Bouchez O; Gabriel C; Izopet J; Meixenberger K; Di Giallonardo F; Schlapbach R; Paredes R; Sakwa J; Schmitz-Agheguian GG; Thielen A; Victor M; Metzner KJ; Däumer MP; Danzer M; Stabentheiner S; Pröll J; Hofer K; Mostmans W; Thys K; Van Marck H; Izopet J; Dubois M; Nicot F; Milan D; Thiele B; Kuecherer C; Nitsche A; Radonic A; Dabrowski PW; Lengauer T; Capobianchi MR; Bruselles A; Giombini E; Rozera G; Bartolini B; Codoñer FM; Pou C; Günthard HF; Yang WL; Aquino C; Bruggmann R; Künzli-Gontarczyk M; Stephens D; Makgamathe M; Khan G; Gordon M; Moreno E, 2016, 'A follow-up of the multicenter collaborative study on HIV-1 drug resistance and tropism testing using 454 ultra deep pyrosequencing', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0146687
    Journal articles | 2016
    di Giallonardo F; Geoghegan JL; Docherty DE; McLean RG; Zody MC; Qu J; Yang X; Birren BW; Malboeuf CM; Newman RM; Ip HS; Holmes EC, 2016, 'Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment', Journal of Virology, 90, pp. 862 - 872, http://dx.doi.org/10.1128/JVI.02305-15
    Journal articles | 2015
    Cozzi-Lepri A; Noguera-Julian M; Di Giallonardo F; Schuurman R; Däumer M; Aitken S; Ceccherini-Silberstein F; Monforte ADA; Geretti AM; Booth CL; Kaiser R; Michalik C; Jansen K; Masquelier B; Bellecave P; Kouyos RD; Castro E; Furrer H; Schultze A; Günthard HF; Brun-Vezinet F; Paredes R; Metzner KJ; Brockmeyer N, 2015, 'Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: A multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing', Journal of Antimicrobial Chemotherapy, 70, pp. 930 - 940, http://dx.doi.org/10.1093/jac/dku426
    Journal articles | 2015
    Di Giallonardo F; Holmes EC, 2015, 'Exploring Host–Pathogen Interactions through Biological Control', PLoS Pathogens, 11, http://dx.doi.org/10.1371/journal.ppat.1004865
    Journal articles | 2015
    Di Giallonardo F; Holmes EC, 2015, 'Viral biocontrol: Grand experiments in disease emergence and evolution', Trends in Microbiology, 23, pp. 83 - 90, http://dx.doi.org/10.1016/j.tim.2014.10.004
    Journal articles | 2015
    Seifert D; Di Giallonardo F; Metzner KJ; Guenthard HF; Beerenwinkel N, 2015, 'A Framework for Inferring Fitness Landscapes of Patient-Derived Viruses Using Quasispecies Theory (vol 199, pg 191, 2014)', GENETICS, 199, pp. 1271 - 1271, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000352734400028&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Journal articles | 2015
    Seifert D; Giallonardo FD; Metzner KJ; Günthard HF; Beerenwinke N, 2015, 'A framework for inferring fitness landscapes of patient-derived viruses using quasispecies theory', Genetics, 199, pp. 191 - 203, http://dx.doi.org/10.1534/genetics.114.172312
    Journal articles | 2014
    Di Giallonardo F; Töpfer A; Rey M; Prabhakaran S; Duport Y; Leemann C; Schmutz S; Campbell NK; Joos B; Lecca MR; Patrignani A; Däumer M; Beisel C; Rusert P; Trkola A; Günthard HF; Roth V; Beerenwinkel N; Metzner KJ, 2014, 'Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations', Nucleic Acids Research, 42, http://dx.doi.org/10.1093/nar/gku537
    Journal articles | 2014
    Simen BB; Braverman MS; Abbate I; Aerssens J; Bidet Y; Bouchez O; Gabriel C; Izopet J; Kessler HH; Stelzl E; Di Giallonardo F; Schlapbach R; Radonic A; Paredes R; Recordon-Pinson P; Sakwa J; St. John EP; Schmitz-Agheguian GG; Metzner KJ; Däumer MP; Danzer M; Hackl C; Pröll J; Niklas N; Bizon B; Van Eygen V; Vandenbroucke I; Van Marck H; Dubois M; Nicot F; Milan D; Masquelier B; Fleury H; Viala S; Däumer M; Marell R; Thiele B; Kuecherer C; Meixenberger K; Nitsche A; Dabrowski PW; Ihlenfeldt HG; Capobianchi MR; Bruselles A; Rozera G; Bartolini B; Stephens D; Makgamathe M; Pillay D; Gordon M; Green T; Codoñer FM; Pou C; Günthard HF; Künzli-Gontarczyk M; Bruggmann R; Qi W; Turenchalk G; Hanczaruk B, 2014, 'An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing', Journal of Virological Methods, 204, pp. 31 - 37, http://dx.doi.org/10.1016/j.jviromet.2014.04.007
    Journal articles | 2013
    Di Giallonardo F; Zagordi O; Duport Y; Leemann C; Joos B; Künzli-Gontarczyk M; Bruggmann R; Beerenwinkel N; Günthard HF; Metzner KJ, 2013, 'Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0074249
    Journal articles | 2012
    Althaus CF; Vongrad V; Niederöst B; Joos B; Di Giallonardo F; Rieder P; Pavlovic J; Trkola A; Günthard HF; Metzner KJ; Fischer M, 2012, 'Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells', Retrovirology, 9, http://dx.doi.org/10.1186/1742-4690-9-27
    Journal articles | 2012
    Decker M; Adamska M; Cronin A; Di Giallonardo F; Burgener J; Marowsky A; Falck JR; Morisseau C; Hammock BD; Gruzdev A; Zeldin DC; Arand M, 2012, 'EH3 (ABHD9): The first member of a new epoxide hydrolase family with high activity for fatty acid epoxides', Journal of Lipid Research, 53, pp. 2038 - 2045, http://dx.doi.org/10.1194/jlr.M024448
    Journal articles | 2011
    Huelsmann PM; Hofmann AD; Knoepfel SA; Popp J; Rauch P; Di Giallonardo F; Danke C; Gueckel E; Schambach A; Wolff H; Metzner KJ; Berens C, 2011, 'A suicide gene approach using the human pro-apoptotic protein tBid inhibits HIV-1 replication', BMC Biotechnology, 11, http://dx.doi.org/10.1186/1472-6750-11-4
    Journal articles | 2011
    Knoepfel SA; Di Giallonardo F; Däumer M; Thielen A; Metzner KJ, 2011, 'In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing', Journal of Virological Methods, 171, pp. 329 - 338, http://dx.doi.org/10.1016/j.jviromet.2010.11.016
    Journal articles | 2011
    Metzner KJ; Leemann C; Di Giallonardo F; Grube C; Scherrer AU; Braun D; Kuster H; Weber R; Guenthard HF, 2011, 'Reappearance of minority K103N HIV-1 variants after interruption of ART initiated during primary HIV-1 infection', PLoS ONE, 6, http://dx.doi.org/10.1371/journal.pone.0021734
  • Preprints | 2022
    Sghaier S; Sailleau C; Marcacci M; Thabet S; Curini V; Ben Hassine T; Teodori L; Portanti O; Hammami S; Jurisic L; Spedicato M; Postic L; Gazani I; Ben Osman R; Zientara S; Breard E; Calistri P; Richt JA; Holmes EC; Savini G; Di Giallonardo F; Lorusso A, 2022, Epizootic Haemorrhagic Disease Virus Serotype 8 in Tunisia, 2021, http://dx.doi.org/10.20944/preprints202211.0195.v1
    Preprints | 2021
    Di Giallonardo F; Puglia I; Curini V; Cammà C; Mangone I; Calistri P; Cobbin JCA; Holmes EC; Lorusso A, 2021, Emergence and spread of SARS-CoV-2 lineages B.1.1.7 and P.1 in Italy, http://dx.doi.org/10.1101/2021.03.24.21254277
    Preprints | 2020
    Campbell SJ; Ashley W; Gil-Fernandez M; Newsome TM; Di Giallonardo F; Ortiz-Baez AS; Mahar JE; Towerton AL; Gillings M; Holmes EC; Carthey AJR; Geoghegan JL, 2020, Red fox viromes across an urban-rural gradient, , http://dx.doi.org/10.1101/2020.06.15.153858
    Preprints | 2020
    Geoghegan JL; Di Giallonardo F; Wille M; Ortiz-Baez AS; Costa VA; Ghaly T; Mifsud JCO; Turnbull OMH; Bellwood DR; Williamson JE; Holmes EC, 2020, Virome composition in marine fish revealed by meta-transcriptomics, , http://dx.doi.org/10.1101/2020.05.06.081505
    Conference Abstracts | 2019
    Adikari TN; Leung P; Grifoni A; Di Giallonardo F; Weiskopf D; Sette A; Bull RA; Luciani F, 2019, 'Pan serotypic, highly conserved CD8 epitopes for a potential T-cell based vaccine against dengue infection', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, PEOPLES R CHINA, Beijing, Vol. 49, pp. 1690 - 1690, presented at 17th International Congress of Immunology of the International-Union-of-Immunological-Societies (IUIS), PEOPLES R CHINA, Beijing, 19 October 2019 - 23 October 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000490026905345&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Preprints | 2019
    Featherstone LA; Di Giallonardo F; Holmes EC; Vaughan TG; Duchêne S, 2019, Infectious disease phylodynamics with occurrence data, http://dx.doi.org/10.1101/596700
    Preprints | 2018
    Di Giallonardo F; Kok J; Fernandez M; Carter I; Geoghegan JL; Dwyer DE; Holmes EC; Eden J-S, 2018, Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia, http://dx.doi.org/10.20944/preprints201808.0318.v1
    Preprints | 2018
    Kerr PJ; Eden J-S; Di Giallonardo F; Peacock D; Liu J; Strive T; Read AF; Holmes EC, 2018, Punctuated evolution of myxoma virus: rapid and disjunct evolution of a recent viral lineage in Australia, http://dx.doi.org/10.1101/465583
    Conference Papers | 2013
    Cozzi-Lepri A; Noguera-Julian M; Di Giallonardo F; Schuurman R; Daeumer M; Aitken S; Guenthard HF; Brun-Vezinet F; Metzner KJ; Paredes R, 2013, 'Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multi-cohort European case-control study using centralized ultrasensitive 454 sequencing', in ANTIVIRAL THERAPY, INT MEDICAL PRESS LTD, CANADA, Toronto, pp. A41 - A41, presented at International Workshop on HIV and Hepatitis Virus Drug Resistance and Curative Strategies, CANADA, Toronto, 04 June 2013 - 08 June 2013, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000335229500037&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2013
    Topfer A; Di Giallonardo F; Metzner KJ; Gunthard HF; Beerenwinkel N, 2013, 'Probing of viral diversity by global haplotype prediction', in 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS), IEEE, pp. 1 - 1, presented at 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 12 June 2013 - 14 June 2013, http://dx.doi.org/10.1109/iccabs.2013.6629231
    Conference Papers | 2008
    Adamska M; Bekteshi M; Cronin A; Decker M; di Giallonardo F; Arand M, 2008, 'Characterisation of a new human epoxide hydrolase capable of metabolizing epoxyeicosatrienoic acids', in FASEB JOURNAL, FEDERATION AMER SOC EXP BIOL, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000208467808115&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2008
    Adamska M; Cronin A; Decker M; Di Giallonardo F; Arand M, 2008, 'Identification and characterization of a new mammalian epoxide hydrolase', in NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, SPRINGER, GERMANY, Mainz, pp. 67 - 67, presented at 49th Annual Meeting of the German-Society-for-Experimental-and-Clinical-Pharmacology-and-Toxicology, GERMANY, Mainz, 11 March 2008 - 13 March 2008, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000254204900333&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2008
    Di Giallonardo F; Adamska M; Arand M, 2008, 'Identification of the amino acid residues responsible for the catalytic activity of the new human epoxide hydrolase', in NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, SPRINGER, GERMANY, Mainz, pp. 67 - 67, presented at 49th Annual Meeting of the German-Society-for-Experimental-and-Clinical-Pharmacology-and-Toxicology, GERMANY, Mainz, 11 March 2008 - 13 March 2008, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000254204900334&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Preprints |
    Wong AKH; Mathivanan V; Di Giallonardo F; Ahlenstiel C; Turville SG, A Molecular Basis for the Increased Transmission of Ebolavirus in Recent Outbreaks, http://dx.doi.org/10.2139/ssrn.3507710

Current projects:

  • Evolutionary history of HIV-1 subtype B and CRF01_AE in New South Wales
  • Identification and characterisation of transmission cluster across time
  • Identification of demographic factors that most impact transmission