Professor Belinda Ferrari

Professor Belinda Ferrari

Professor

Education

  • Macquarie University Research Fellowship, Macquarie University, Sydney, NSW, Australia 2002-2005
  • Postdoctoral Scientist, University of Copenhagen, Denmark 2001-2002
  • PhD in Microbiology at Macquarie University, Sydney, NSW, Australia 2001
  • BSc (Hons) in Microbiology at the University of New England, Armidale, NSW, Australia, 1994
Science
School of Biotech & Biomolecular Science

Biography

I am currently the Associate Dean Research in the Faculty of Science. Previously, I was Deputy Head of School and the Director of Research in the School of Biotechnology and Biomolecular Sciences. My research area is environmental microbiology and I specialise in uncovering Antarctica's soil biodiversity by performing discovery-based and applied research. I am passionate about integrating 'omics' with innovative cultivation methods to the isolate and describe the diversity and functional capacity of 'extreme' microbial communities. By doing so, my team discovered a previously overlooked  carbon fixation process where  bacteria literally ‘live on thin air’. We coined this microbial-based process ‘atmospheric chemosynthesis’ and published these findings in the prestigious journal Nature. My team also works on using microbes as indicators of soil health, for the assessment of ecosystem recovery during bioremediation and for developing site-specific ecotoxicity assessments. My future goals are to continue to challenge our understanding of the nutritional limits and the boundaries of life, while training the next generation of confident scientists.

 

I am a supportive, approachable supervisor with my team being comprised of a high number of PhD and Honours students

  • Uncovering the diversity of novel secondary metabolites in polar soils - Nicole Benaud, PhD; Completed 2020
  • Residual toxicity and bioremediation of soils at Casey station, Antarctica - Sarita Pudasaini, PhD; Completed 2020
  • Isolation and characterisation of Candidatus Dormibacteraeota (AD3) in Antarctic soil- Kate Montgomery, PhD; Completed 2021
  • Understanding drivers of the nitrogen cycle in pristine and hydrocarbon contaminated polar soils - Sally Crane, PhD
  • Microbial diversity and drivers of community assembly across east Antarctica - Eden Zhang, PhD; Completed 2021
  • Mapping the global significance of atmospheric chemosynthesis - Angelique Ray, PhD; Completed 2022
  • Microbial community shifts after a decade of change in the Windmill Islands, east Antarctica - Sin Yin Wong, PhD
  • Microbial bioactives and elucidating their role in Antarctica - Carolina Gutiérrez-Chávez, PhD; Completed 2022
  • Cultivation and characterisation of ammonia oxidising Archaea from Antarctic Enrichments – Devan Chelliah, PhD
  • Ecotoxicity assessments of aged hydrocarbon contaminated soils at Casey station - Jessica Dai, Honours; Completed 2021
  • Can Candidatus Eremiobacterota be cultivated? - Dana Tribbia, Honours; Completed 2021

 

Leadership and Service

  • UNSW Sydney, Associate Dean Research, Faculty of Science 2022-
  • UNSW Sydney, Deputy Head of School and Director of Research, School of BABS, 2018 - 2022
  • UNSW Sydney, University Promotion Committee (A/Prof) 2018 - 2020
  • UNSW Sydney, Senior Lecturer Promotion Committee, Faculty of Science 2017-2018
  • International Scientific Committee Member for Polar and Alpine Microbiology conference, 2019
  • Australian Microbiome Scientific Co-ordination Working Group, 2019 - current
  • UNSW Sydney, Faculty of Science Board member, 2018 - current
  • Royal Society of New Zeakand, Marsden Fund, Panelist Ecology, Evolution and Behaviour, 2017-2019
  • Academy of Sciences National Committee for Antarctic Research, 2012-2016
Phone
+61-2-9065 1256
Location
Room 4102, Level 4, E26
  • Book Chapters | 2017
    van Dorst J; Benaud N; Ferrari B, 2017, 'New insights into the microbial diversity of polar desert soils: A biotechnological perspective', in Microbial Ecology of Extreme Environments, Springer, pp. 169 - 183, http://dx.doi.org/10.1007/978-3-319-51686-8_7
    Book Chapters | 2014
    Aislabie JM; Novis PM; Ferrari B, 2014, 'Microbiology of eutrophic (Ornithogenic and Hydrocarbon-Contaminated) soil', in Antarctic Terrestrial Microbiology: Physical and Biological Properties of Antarctic Soils, pp. 91 - 113, http://dx.doi.org/10.1007/978-3-642-45213-0_6
    Book Chapters | 2014
    Aislabie JM; Novis PM; Ferrari BC, 2014, 'Microbiology of Eutrophic (Ornithogenic and Hydrocarbon-Contaminated) Soil', in Cowan D (ed.), Antarctic Terrestrial Microbiology, Springer, Heidelberg; New York; Dordrecht; London, pp. 91 - 113, http://dx.doi.org/10.1007/978-3-642-45213-0
    Book Chapters | 2011
    Ferrari BC; Winsley T; Van dorst J; Bergquist P, 2011, 'Flow Cytometry in Environmental Microbiology: A rapid approach for the isolation of single-cells for advanced molecular biology analysis', in Navid A (ed.), Microbial Systems Biology: Methods and Protocols. Methods in Molecular Biology Series, Humana Press, Inc.
    Book Chapters | 2001
    Ferrari BC, 2001, 'Automated detection and viability assessment', in Cryptosporidium: The Analytical Challenge
  • Journal articles | 2024
    Chelliah DS; Ray AE; Zhang E; Terauds A; Ferrari BC, 2024, 'The Vestfold Hills are alive: characterising microbial and environmental dynamics in Old Wallow, eastern Antarctica', Frontiers in Microbiology, 15, http://dx.doi.org/10.3389/fmicb.2024.1443491
    Journal articles | 2024
    Coleine C; Albanese D; Ray AE; Delgado-Baquerizo M; Stajich JE; Williams TJ; Larsen S; Tringe S; Pennacchio C; Ferrari BC; Donati C; Selbmann L, 2024, 'Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability', Science of the Total Environment, 917, http://dx.doi.org/10.1016/j.scitotenv.2024.170290
    Journal articles | 2024
    Varliero G; Lebre PH; Adams B; Chown SL; Convey P; Dennis PG; Fan D; Ferrari B; Frey B; Hogg ID; Hopkins DW; Kong W; Makhalanyane T; Matcher G; Newsham KK; Stevens MI; Weigh KV; Cowan DA, 2024, 'Biogeographic survey of soil bacterial communities across Antarctica', Microbiome, 12, http://dx.doi.org/10.1186/s40168-023-01719-3
    Journal articles | 2024
    Williams TJ; Allen MA; Ray AE; Benaud N; Chelliah DS; Albanese D; Donati C; Selbmann L; Coleine C; Ferrari BC, 2024, 'Novel endolithic bacteria of phylum Chloroflexota reveal a myriad of potential survival strategies in the Antarctic desert', Applied and Environmental Microbiology, 90, http://dx.doi.org/10.1128/aem.02264-23
    Journal articles | 2024
    Zhang E; Wilkins D; Crane S; Chelliah DS; van Dorst J; Abdullah K; Tribbia DZ; Hince G; Spedding T; Ferrari B, 2024, 'Urea amendment decouples nitrification in hydrocarbon contaminated Antarctic soil', Chemosphere, 354, http://dx.doi.org/10.1016/j.chemosphere.2024.141665
    Journal articles | 2024
    Zhang E; Wong SY; Czechowski P; Terauds A; Ray AE; Benaud N; Chelliah DS; Wilkins D; Montgomery K; Ferrari BC, 2024, 'Effects of increasing soil moisture on Antarctic desert microbial ecosystems', Conservation Biology, 38, http://dx.doi.org/10.1111/cobi.14268
    Journal articles | 2023
    Abdullah K; Wilkins D; Ferrari BC, 2023, 'Utilization of—Omic technologies in cold climate hydrocarbon bioremediation: a text-mining approach', Frontiers in Microbiology, 14, pp. 1113102, http://dx.doi.org/10.3389/fmicb.2023.1113102
    Journal articles | 2023
    Cowan DA; Cary SC; DiRuggiero J; Eckardt F; Ferrari B; Hopkins DW; Lebre PH; Maggs-Kölling G; Pointing SB; Ramond JB; Tribbia D; Warren-Rhodes K, 2023, '‘Follow the Water’: Microbial Water Acquisition in Desert Soils', Microorganisms, 11, http://dx.doi.org/10.3390/microorganisms11071670
    Journal articles | 2023
    Liu Y; Ji M; Wang W; Xing T; Yan Q; Ferrari B; Liu Y, 2023, 'Plant colonization mediates the microbial community dynamics in glacier forelands of the Tibetan Plateau', iMeta, 2, http://dx.doi.org/10.1002/imt2.91
    Journal articles | 2023
    Ray AE; Tribbia DZ; Cowan DA; Ferrari BC, 2023, 'Clearing the air: unraveling past and guiding future research in atmospheric chemosynthesis', Microbiology and Molecular Biology Reviews, 87, http://dx.doi.org/10.1128/mmbr.00048-23
    Journal articles | 2022
    Benaud N; Chelliah DS; Wong SY; Ferrari BC, 2022, 'Soil substrate culturing approaches recover diverse members of Actinomycetota from desert soils of Herring Island, East Antarctica', Extremophiles, 26, http://dx.doi.org/10.1007/s00792-022-01271-2
    Journal articles | 2022
    Cowan DA; Ferrari BC; Mckay CP, 2022, 'Out of Thin Air? Astrobiology and Atmospheric Chemotrophy', Astrobiology, 22, pp. 225 - 232, http://dx.doi.org/10.1089/ast.2021.0066
    Journal articles | 2022
    Ji M; Kong W; Jia H; Delgado-Baquerizo M; Zhou T; Liu X; Ferrari BC; Malard L; Liang C; Xue K; Makhalanyane TP; Zhu YG; Wang Y; Pearce DA; Cowan D, 2022, 'Polar soils exhibit distinct patterns in microbial diversity and dominant phylotypes', Soil Biology and Biochemistry, 166, http://dx.doi.org/10.1016/j.soilbio.2022.108550
    Journal articles | 2022
    Montgomery K; Williams TJ; Brettle M; Berengut JF; Zhang E; Zaugg J; Hugenholtz P; Ferrari BC, 2022, 'Corrigendum to: Persistence and resistance: survival mechanisms of Candidatus Dormibacterota from nutrient-poor Antarctic soils (Environmental Microbiology, (2021), 23, 8, (4276-4294), 10.1111/1462-2920.15610)', Environmental Microbiology, 24, pp. 4491 - 4491, http://dx.doi.org/10.1111/1462-2920.16191
    Journal articles | 2022
    Ray AE; Zaugg J; Benaud N; Chelliah DS; Bay S; Wong HL; Leung PM; Ji M; Terauds A; Montgomery K; Greening C; Cowan DA; Kong W; Williams TJ; Hugenholtz P; Ferrari BC, 2022, 'Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts', ISME Journal, 16, pp. 2547 - 2560, http://dx.doi.org/10.1038/s41396-022-01298-5
    Journal articles | 2021
    Benaud N; Edwards RJ; Amos TG; D'Agostino PM; Gutiérrez-Chávez C; Montgomery K; Nicetic I; Ferrari BC, 2021, 'Antarctic desert soil bacteria exhibit high novel natural product potential, evaluated through long-read genome sequencing and comparative genomics', Environmental Microbiology, 23, pp. 3646 - 3664, http://dx.doi.org/10.1111/1462-2920.15300
    Journal articles | 2021
    Gutiérrez-Chávez C; Benaud N; Ferrari BC, 2021, 'The ecological roles of microbial lipopeptides: Where are we going?', Computational and Structural Biotechnology Journal, 19, pp. 1400 - 1413, http://dx.doi.org/10.1016/j.csbj.2021.02.017
    Journal articles | 2021
    Ji M; Williams TJ; Montgomery K; Wong HL; Zaugg J; Berengut JF; Bissett A; Chuvochina M; Hugenholtz P; Ferrari BC, 2021, 'Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations', ISME Journal, 15, pp. 2692 - 2707, http://dx.doi.org/10.1038/s41396-021-00944-8
    Journal articles | 2021
    Montgomery K; Williams TJ; Brettle M; Berengut JF; Angelique E; Zhang E; Zaugg J; Hugenholtz P; Ferrari BC; Ray A, 2021, 'Persistence and resistance: survival mechanisms of Candidatus Dormibacterota from nutrient-poor Antarctic soils', Environmental Microbiology, 23, pp. 4276 - 4294, http://dx.doi.org/10.1111/1462-2920.15610
    Journal articles | 2021
    Vendl C; Nelson T; Ferrari B; Thomas T; Rogers T, 2021, 'Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota', BMC Microbiology, 21, pp. 20, http://dx.doi.org/10.1186/s12866-020-02076-z
    Journal articles | 2021
    van Dorst J; Wilkins D; Crane S; Montgomery K; Zhang E; Spedding T; Hince G; Ferrari B, 2021, 'Microbial community analysis of biopiles in Antarctica provides evidence of successful hydrocarbon biodegradation and initial soil ecosystem recovery', Environmental Pollution, 290, http://dx.doi.org/10.1016/j.envpol.2021.117977
    Journal articles | 2020
    Chen R; Wong HL; Kindler GS; MacLeod FI; Benaud N; Ferrari BC; Burns BP, 2020, 'Discovery of an Abundance of Biosynthetic Gene Clusters in Shark Bay Microbial Mats', Frontiers in Microbiology, 11, http://dx.doi.org/10.3389/fmicb.2020.01950
    Journal articles | 2020
    Ferrari B, 2020, 'Response to Letter to Editor regarding Pudasaini et al. (2019), Characterisation of polar metabolites and evaluation of their potential toxicity in hydrocarbon contaminated soil elutriates. Science of the Total Environment, v689, 390–397', Science of the Total Environment, 712, pp. 135470, http://dx.doi.org/10.1016/j.scitotenv.2019.135470
    Journal articles | 2020
    Ji M; Kong W; Stegen J; Yue L; Wang F; Dong X; Cowan DA; Ferrari BC, 2020, 'Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils', Environmental Microbiology, 22, pp. 2261 - 2272, http://dx.doi.org/10.1111/1462-2920.14993
    Journal articles | 2020
    Ray AE; Zhang E; Terauds A; Ji M; Kong W; Ferrari BC, 2020, 'Soil Microbiomes With the Genetic Capacity for Atmospheric Chemosynthesis Are Widespread Across the Poles and Are Associated With Moisture, Carbon, and Nitrogen Limitation', Frontiers in Microbiology, 11, pp. 1936, http://dx.doi.org/10.3389/fmicb.2020.01936
    Journal articles | 2020
    Ruprecht JE; Glamore WC; Dafforn KA; Wemheuer F; Crane SL; van Dorst J; Johnston EL; Mitrovic SM; Turner IL; Ferrari BC; Birrer SC, 2020, 'A novel real-world ecotoxicological dataset of pelagic microbial community responses to wastewater', Scientific Data, 7, pp. 158, http://dx.doi.org/10.1038/s41597-020-0496-5
    Journal articles | 2020
    Vendl C; Slavich E; Nelson T; Acevedo-Whitehouse K; Montgomery K; Ferrari B; Thomas T; Rogers T, 2020, 'Does sociality drive diversity and composition of airway microbiota in cetaceans?', Environmental Microbiology Reports, 12, pp. 324 - 333, http://dx.doi.org/10.1111/1758-2229.12835
    Journal articles | 2020
    Vendl C; Slavich E; Wemheuer B; Nelson T; Ferrari B; Thomas T; Rogers T, 2020, 'Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast', Scientific Reports, 10, pp. 12645, http://dx.doi.org/10.1038/s41598-020-69602-x
    Journal articles | 2020
    Wong SY; Charlesworth JC; Benaud N; Burns BP; Ferrari BC, 2020, 'Communication within east antarctic soil bacteria', Applied and Environmental Microbiology, 86, http://dx.doi.org/10.1128/AEM.01968-19
    Journal articles | 2020
    Zhang C; Sirijovski N; Adler L; Ferrari BC, 2020, 'Corrigendum to “Exophiala macquariensis sp. nov., a cold adapted black yeast species recovered from a hydrocarbon contaminated sub-antarctic soil” [Fungal Biol. 123 (2) (2019) 151–158] (Fungal Biology (2019) 123(2) (151–158), (S1878614618302149), (10.1016/j.funbio.2018.11.011))', Fungal Biology, 124, pp. 981, http://dx.doi.org/10.1016/j.funbio.2020.09.006
    Journal articles | 2020
    Zhang E; Thibaut LM; Terauds A; Raven M; Tanaka MM; Van Dorst J; Wong SY; Crane S; Ferrari BC, 2020, 'Lifting the veil on arid-to-hyperarid Antarctic soil microbiomes: A tale of two oases', Microbiome, 8, pp. 37, http://dx.doi.org/10.1186/s40168-020-00809-w
    Journal articles | 2020
    van Dorst J; Wilkins D; King CK; Spedding T; Hince G; Zhang E; Crane S; Ferrari B, 2020, 'Applying microbial indicators of hydrocarbon toxicity to contaminated sites undergoing bioremediation on subantarctic Macquarie Island', Environmental Pollution, 259, http://dx.doi.org/10.1016/j.envpol.2019.113780
    Journal articles | 2019
    Benaud N; Zhang E; Van Dorst J; Brown MV; Kalaitzis JA; Neilan BA; Ferrari BC, 2019, 'Harnessing long-read amplicon sequencing to uncover NRPS and Type i PKS gene sequence diversity in polar desert soils', FEMS Microbiology Ecology, 95, http://dx.doi.org/10.1093/femsec/fiz031
    Journal articles | 2019
    Pudasaini S; Wilkins D; Adler L; Hince G; Spedding T; King C; Ferrari B, 2019, 'Characterization of polar metabolites and evaluation of their potential toxicity in hydrocarbon contaminated Antarctic soil elutriates', Science of the Total Environment, 689, pp. 390 - 397, http://dx.doi.org/10.1016/j.scitotenv.2019.06.389
    Journal articles | 2019
    Vendl C; Ferrari BC; Thomas T; Slavich E; Zhang E; Nelson T; Rogers T, 2019, 'Interannual comparison of core taxa and community composition of the blow microbiota from East Australian humpback whales', FEMS Microbiology Ecology, 95, http://dx.doi.org/10.1093/femsec/fiz102
    Journal articles | 2019
    Zhang C; Sirijovski N; Adler L; Ferrari BC, 2019, 'Exophiala macquariensis sp. nov., a cold adapted black yeast species recovered from a hydrocarbon contaminated sub-Antarctic soil', Fungal Biology, 123, pp. 151 - 158, http://dx.doi.org/10.1016/j.funbio.2018.11.011
    Journal articles | 2019
    Zhang E; Thibaut L; Terauds A; Wong S; van Dorst J; Tanaka M; Ferrari B, 2019, 'Extreme niche partitioning promotes a remarkably high diversity of soil microbiomes across eastern Antarctica', , http://dx.doi.org/10.1101/559666
    Journal articles | 2018
    Bay S; Ferrari B; Greening C, 2018, 'Life without water: How do bacteria generate biomass in desert ecosystems?', Microbiology Australia, 39, pp. 28 - 32, http://dx.doi.org/10.1071/MA18008
    Journal articles | 2018
    Crane SL; van Dorst J; Hose GC; King CK; Ferrari BC, 2018, 'Microfluidic qPCR Enables high throughput quantification of microbial functional genes but requires strict curation of primers', Frontiers in Environmental Science, 6, http://dx.doi.org/10.3389/fenvs.2018.00145
    Journal articles | 2017
    Bissett A; Fitzgerald A; Court L; Meintjes T; Mele PM; Reith F; Dennis PG; Breed MF; Brown B; Brown MV; Brugger J; Byrne M; Caddy-Retalic S; Carmody B; Coates DJ; Correa C; Ferrari BC; Gupta VVSR; Hamonts K; Haslem A; Hugenholtz P; Karan M; Koval J; Lowe AJ; Macdonald S; McGrath L; Martin D; Morgan M; North KI; Paungfoo-Lonhienne C; Pendall E; Phillips L; Pirzl R; Powell JR; Ragan MA; Schmidt S; Seymour N; Snape I; Stephen JR; Stevens M; Tinning M; Williams K; Yeoh YK; Zammit CM; Young A, 2017, 'Erratum: Introducing BASE: The Biomes of Australian Soil Environments soil microbial diversity database [GigaScience. 5, 1, (2016) (1-11)] DOI: 10.1186/s13742-016-0126-5', GigaScience, 6, pp. 1, http://dx.doi.org/10.1093/gigascience/gix021
    Journal articles | 2017
    Delgado-Baquerizo M; Powell JR; Hamonts K; Reith F; Mele P; Brown MV; Dennis PG; Ferrari BC; Fitzgerald A; Young A; Singh BK; Bissett A, 2017, 'Circular linkages between soil biodiversity, fertility and plant productivity are limited to topsoil at the continental scale', New Phytologist, 215, pp. 1186 - 1196, http://dx.doi.org/10.1111/nph.14634
    Journal articles | 2017
    Ji M; Greening C; Vanwonterghem I; Carere CR; Bay SK; Steen JA; Montgomery K; Lines T; Beardall J; Van Dorst J; Snape I; Stott MB; Hugenholtz P; Ferrari BC, 2017, 'Atmospheric trace gases support primary production in Antarctic desert surface soil', Nature, 552, pp. 400 - 403, http://dx.doi.org/10.1038/nature25014
    Journal articles | 2017
    Ji M; Tang S; Ferrari BC, 2017, 'Izhakiella australiensis sp. nov. isolated from an Australian desert soil', International Journal of Systematic and Evolutionary Microbiology, 67, pp. 4317 - 4322, http://dx.doi.org/10.1099/ijsem.0.002171
    Journal articles | 2017
    Pudasaini S; Wilson J; Ji M; van Dorst J; Snape I; Palmer AS; Burns BP; Ferrari BC, 2017, 'Microbial diversity of browning Peninsula, Eastern Antarctica revealed using molecular and cultivation methods', Frontiers in Microbiology, 8, pp. 591, http://dx.doi.org/10.3389/fmicb.2017.00591
    Journal articles | 2016
    Alexova R; Dang TC; Fujii M; Raftery MJ; Waite TD; Ferrari BC; Neilan BA, 2016, 'Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa', Environmental Microbiology, 18, pp. 401 - 413, http://dx.doi.org/10.1111/1462-2920.12958
    Journal articles | 2016
    Banerjee S; Helgason B; Wang L; Winsley T; Ferrari BC; Siciliano SD, 2016, 'Legacy effects of soil moisture on microbial community structure and N2O emissions', Soil Biology and Biochemistry, 95, pp. 40 - 50, http://dx.doi.org/10.1016/j.soilbio.2015.12.004
    Journal articles | 2016
    Bissett A; Fitzgerald A; Meintjes T; Mele PM; Reith F; Dennis PG; Breed MF; Brown B; Brown MV; Brugger J; Byrne M; Caddy-Retalic S; Carmody B; Coates DJ; Correa C; Ferrari BC; Gupta VVSR; Hamonts K; Haslem A; Hugenholtz P; Karan M; Koval J; Lowe AJ; Macdonald S; McGrath L; Martin D; Morgan M; North KI; Paungfoo-Lonhienne C; Pendall E; Phillips L; Pirzl R; Powell JR; Ragan MA; Schmidt S; Seymour N; Snape I; Stephen JR; Stevens M; Tinning M; Williams K; Yeoh YK; Zammit CM; Young A, 2016, 'Introducing BASE: The Biomes of Australian Soil Environments soil microbial diversity database', GigaScience, 5, http://dx.doi.org/10.1186/s13742-016-0126-5
    Journal articles | 2016
    Ferrari BC; Bissett A; Snape I; van Dorst J; Palmer AS; Ji M; Siciliano SD; Stark JS; Winsley T; Brown MV, 2016, 'Geological connectivity drives microbial community structure and connectivity in polar, terrestrial ecosystems', Environmental microbiology, 18, pp. 1834 - 1849, http://dx.doi.org/10.1111/1462-2920.13034
    Journal articles | 2016
    Ji M; van Dorst J; Bissett A; Brown MV; Palmer AS; Snape I; Siciliano SD; Ferrari BC, 2016, 'Microbial diversity at Mitchell Peninsula, Eastern Antarctica: a potential biodiversity “hotspot”', Polar Biology, 39, pp. 237 - 249, http://dx.doi.org/10.1007/s00300-015-1776-y
    Journal articles | 2016
    Van Dorst JM; Hince G; Snape I; Ferrari BC, 2016, 'Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil', Scientific Reports, 6, pp. 36724, http://dx.doi.org/10.1038/srep36724
    Journal articles | 2016
    Wunderlin T; Ferrari B; Power M, 2016, 'Global and local-scale variation in bacterial community structure of snow from the Swiss and Australian Alps', FEMS Microbiology Ecology, 92, http://dx.doi.org/10.1093/femsec/fiw132
    Journal articles | 2015
    Alexova R; Dang TC; Fujii M; Raftery MJ; Waite TD; Ferrari BC; Neilan BA, 2015, 'Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa', Environmental Microbiology, http://dx.doi.org/10.1111/1462-2920.12958
    Journal articles | 2014
    Dorst JV; Siciliano SD; Winsley T; Snape I; Ferrari BC, 2014, 'Bacterial targets as potential indicators of diesel fuel toxicity in subantarctic soils', Applied and Environmental Microbiology, 80, pp. 4021 - 4033, http://dx.doi.org/10.1128/AEM.03939-13
    Journal articles | 2014
    Ferrari B; Winsley T; Ji M; Neilan B, 2014, 'Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing', Scientific Reports, 4, http://dx.doi.org/10.1038/srep03957
    Journal articles | 2014
    Siciliano SD; Palmer AS; Winsley T; Lamb E; Bissett A; Brown MV; van Dorst J; Ji M; Ferrari BC; Grogan P; Chu H; Snape I, 2014, 'Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities', Soil Biology and Biochemistry, 78, pp. 10 - 20, http://dx.doi.org/10.1016/j.soilbio.2014.07.005
    Journal articles | 2014
    Winsley TJ; Snape I; McKinlay J; Stark J; van Dorst JM; Ji M; Ferrari BC; Siciliano SD, 2014, 'The ecological controls on the prevalence of candidate division TM7 in polar regions', Frontiers in Microbiology, 5, pp. 345, http://dx.doi.org/10.3389/fmicb.2014.00345
    Journal articles | 2014
    van Dorst J; Bissett A; Palmer AS; Brown M; Snape I; Stark JS; Raymond B; McKinlay J; Ji M; Winsley T; Ferrari BC, 2014, 'Community fingerprinting in a sequencing world', FEMS Microbiology Ecology, 89, pp. 316 - 330, http://dx.doi.org/10.1111/1574-6941.12308
    Journal articles | 2013
    Ferrari BC, 2013, 'Three-color cytometry for the simultaneous detection of the Cryptosporidium species contributing to the majority of human cryptosporidiosis. Journal of Public Health Frontier', Journal of Public Health Frontier, 2, pp. 103 - 108, http://dx.doi.org/10.5963/PHF0202007
    Journal articles | 2012
    Ferrari BC; Winsley T; Bergquist P; van Dorst JM, 2012, 'Flow cytometry in environmental microbiology: a rapid approach for the isolation of single cells for advanced molecular biology analysis.', Methods in Molecular Biology, 881, pp. 3 - 26, http://dx.doi.org/10.1007/978-1-61779-827-6_1
    Journal articles | 2012
    Winsley T; van Dorst JM; Brown MV; Ferrari BC, 2012, 'Capturing greater 16S rRNA gene sequence diversity within the domain bacteria', Applied and Environmental Microbiology, 78, pp. 5938 - 5941, http://dx.doi.org/10.1128/AEM.01299-12
    Journal articles | 2011
    Alexova R; Fujii M; Birch D; Cheng J; Waite TD; Ferrari BC; Neilan BA, 2011, 'Iron uptake and toxin synthesis in the bloom-forming Microcystis aeruginosa under iron limitation', Environmental Microbiology, 13, pp. 1064 - 1077, http://dx.doi.org/10.1111/j.1462-2920.2010.02412.x
    Journal articles | 2011
    Alexova R; Haynes P; Ferrari BC; Neilan BA, 2011, 'Comparative protein expression in different strains of the bloom-forming Cyanobacterium Microcystis aeruginosa', Molecular and Cellular Proteomics, http://dx.doi.org/10.1074/mcp.M110.003749-1
    Journal articles | 2011
    Ferrari BC; Zhang C; Van dorst J, 2011, 'Recovering greater fungal diversity from pristine and diesel fuel contaminated sub-Antarctic soil through cultivation using both a high and a low nutrient media approach', Frontiers in Microbiology, 2, pp. 1 - 14, http://dx.doi.org/10.3389/fmcib.2011.00217
    Journal articles | 2011
    Ibanez-Peral R; Ferrari BC; Bergquist P, 2011, 'Detection of environmental microorganisms with a bead-based assay and quantum dots', International Journal of Biomedical Nanoscience and Nanotechnology, 2, pp. 75 - 95, http://dx.doi.org/10.1504/..038468
    Journal articles | 2011
    Waldron L; Dimeski B; Beggs P; Ferrari BC; Power M, 2011, 'Molecular epidemiology, spatiotemporal analysis, and ecology of sporadic human cryptosporidiosis in Australia', Applied and Environmental Microbiology, 77, pp. 7757 - 7765, http://dx.doi.org/10.1128/AEM.00615-11
    Journal articles | 2011
    Waldron L; Ferrari BC; Cheung-kwok-sang C; Beggs P; Stephens N; Power M, 2011, 'Molecular epidemiology and spatial distribution of a waterborne cryptosporidiosis outbreak in Australia', Applied and Environmental Microbiology, 77, pp. 7766 - 7771, http://dx.doi.org/10.1128/AEM.00616-11
    Journal articles | 2009
    Alagappan A; Bergquist P; Ferrari BC, 2009, 'Development of a two-color fluorescence in situ hybridization technique for species-level identification of human-infectious Cryptosporidium spp', Applied and Environmental Microbiology, 75, pp. 5996 - 5998, http://dx.doi.org/10.1128/AEM.00643-09
    Journal articles | 2009
    Bergquist P; Hardiman E; Ferrari BC; Winsley T, 2009, 'Applications of flow cytometry in environmental microbiology and biotechnology', Extremophiles, 13, pp. 389 - 401, http://dx.doi.org/10.1007/s00792-009-0236-4
    Journal articles | 2009
    Ferrari BC; Gillings M, 2009, 'Cultivation of fastidious bacteria by viability staining and micromanipulation in a soil substrate membrane system', Applied and Environmental Microbiology, 75, pp. 3352 - 3354, http://dx.doi.org/10.1128/AEM.02407-08
    Journal articles | 2009
    Waldron L; Ferrari BC; Gillings M; Power M, 2009, 'Terminal restriction fragment length polymorphism for identification of cryptosporidium species in human feces', Applied and Environmental Microbiology, 75, pp. 108 - 112, http://dx.doi.org/10.1128/AEM.01341-08
    Journal articles | 2009
    Waldron L; Ferrari BC; Power M, 2009, 'Glycoprotein 60 diversity in C. hominis and C. parvum causing human cryptosporidiosis in NSW, Australia', Experimental Parasitology, 122, pp. 124 - 127, http://dx.doi.org/10.1016/j.exppara.2009.02.006
    Journal articles | 2008
    Aladaileh S; Mohammad MG; Ferrari BC; Nair SV; Raftos DA, 2008, 'In vitro effects of noradrenaline on Sydney rock oyster (Saccostrea glomerata) hemocytes', Comparative Biochemistry and Physiology A - Molecular and Integrative Physiology, 151, pp. 691 - 697, http://dx.doi.org/10.1016/j.cbpa.2008.08.028
    Journal articles | 2008
    Alagappan A; Tujula NA; Power ME; Ferguson CM; Bergquist P; Ferrari BC, 2008, 'Development of fluorescent in situ hybridisation for Cryptosporidium detection reveals zoonotic and anthroponotic transmission of sporadic cryptosporidiosis in Sydney', Journal of Microbiological Methods, 75, pp. 535 - 539, http://dx.doi.org/10.1016/j.mimet.2008.08.007
    Journal articles | 2008
    Ferrari BC; Winsley T; Gillings M; Binnerup S, 2008, 'Cultivating previously uncultured soil bacteria using a soil substrate membrane system', Nature Protocols, 3, pp. 1261 - 1269, http://dx.doi.org/10.1038/nprot.2008.102
    Journal articles | 2008
    Ibanez-Peral R; Bergquist P; Walter MR; Gibbs M; Goldys EM; Ferrari BC, 2008, 'Potential Use of Quantum Dots in Flow Cytometry', International Journal of Molecular Sciences, 9, pp. 2622 - 2638, http://dx.doi.org/10.3390/ijms9122622
    Journal articles | 2007
    Ferrari BC; Bergquist P, 2007, 'Quantum dots as alternatives to organic fluorophores for Cryptosporidium detection using conventional flow cytometry and specific monoclonal antibodies: lessons learned', CYTOMETRY PART A, 71A, pp. 265 - 271, http://dx.doi.org/10.1002/cyto.a.20381
    Journal articles | 2007
    Ferrari BC; Power M; Bergquist PL, 2007, 'Closed-tube DNA extraction using a thermostable proteinase is highly sensitive, capable of single parasite detection', Biotechnology Letters, 29, pp. 1831 - 1837, http://dx.doi.org/10.1007/s10529-007-9487-2
    Journal articles | 2006
    Ferrari BC; Stoner K; Bergquist P, 2006, 'Applying fluorescence technology to the recovery and isolation of Cryptosporidium and Giardia from industrial wastewater', Water Research, 40, pp. 541 - 548, http://dx.doi.org/10.1016/j.watres.2005.11.037
    Journal articles | 2006
    Ferrari BC; Tujula NA; Stoner K; Kjelleberg S, 2006, 'Catalyzed reporter deposition-fluorescence in situ hybridization allows for enrichment-independent detection of microcolony-forming soil bacteria', Applied and Environmental Microbiology, 72, pp. 918 - 922, http://dx.doi.org/10.1128/AEM.72.1.918-922.2006
    Journal articles | 2006
    Mai-Prochnow AG; Webb JS; Ferrari BC; Kjelleberg S, 2006, 'Ecological advantages of autolysis during the development and dispersal of Pseudoalteromonas tunicata biofilms', Applied and Environmental Microbiology, 72, pp. 5414 - 5420, http://dx.doi.org/10.1128/AEM.00546-06
    Journal articles | 2006
    Power ML; Ferrari BC; Littlefield-Wyer J; Gordon DM; Slade MB; Veal DA, 2006, 'A naturally occurring novel allele of Escherichia coli outer membrane protein A reduces sensitivity to bacteriophage', Applied and Environmental Microbiology, 72, pp. 7930 - 7932, http://dx.doi.org/10.1128/AEM.01040-06
    Journal articles | 2006
    Truong Q; Ferrari BC, 2006, 'Quantitative and qualitative comparisons of Cryptosporidium faecal purification procedures for the isolation of oocysts suitable for proteomic analysis', International Journal for Parasitology, 36, pp. 811 - 819, http://dx.doi.org/10.1016/j.ijpara.2006.02.023
    Journal articles | 2005
    Ferrari BC; Binnerup SJ; Gillings M, 2005, 'Microcolony cultivation on a soil-substrate membrane system selects for previously uncultured soil bacteria', Applied and Environmental Microbiology, 71, pp. 8174 - 8720, http://dx.doi.org/10.1128/AEM.71.12.8714-8720.2005
    Journal articles | 2004
    Ferrari BC; Oregaard G; Sorenson SJ, 2004, 'Studying the purity and recovery of GFP-labelled bacteria for culturing and molecular analysis following fluorescence activated cell sorting using a benchtop flow cytometer', Microbial Ecology, 48, pp. 239 - 245, http://dx.doi.org/10.1007/s00248-003-1069-9
    Journal articles | 2003
    Ferrari BC; Attfield PV; Veal DA; Bell PJ, 2003, 'Application of the novel fluorescent dye Beljian red to the differentiation of Giardia cysts', Journal of Microbiological Methods, 52, pp. 133 - 135, http://dx.doi.org/10.1016/S0167-7012(02)00130-6
    Journal articles | 2003
    Ferrari BC; Veal D, 2003, 'Analysis-only Detection of Giardia by Combining Immunomagnetic Separation and Two-Color Flow Cytometry', Cytometry Part A, 51, pp. 79 - 86
    Journal articles | 2003
    Ferrari BC; Veal DA, 2003, 'Analysis-only Detection of Giardia by Combining Immunomagnetic Separation and Two-Color Flow Cytometry', CYTOMETRY PART A, 51A, pp. 79 - 86, http://dx.doi.org/10.1002/cyto.a.10009
    Journal articles | 2003
    Mackintosh JA; Choi H-Y; Bae S-H; Veal DA; Bell PJ; Ferrari BC; van Dyk DD; Verrills NM; Paik Y-K; Karuso P, 2003, 'A fluorescent natural product for ultra sensitive detection of proteins in 1-D and 2-D gel electrophoresis', Proteomics, 3, pp. 2273 - 2288, http://dx.doi.org/10.1002/pmic.200300578
    Journal articles | 2001
    Hansen LH; Ferrari B; Sørensen AH; Veal D; Sørensen SJ, 2001, 'Detection of oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry', Applied and Environmental Microbiology, 67, pp. 239 - 244, http://dx.doi.org/10.1128/AEM.67.1.239-244.2001
    Journal articles | 2000
    Ferrari BC; Vesey G; Davis KA; Gauci M; Veal D, 2000, 'A novel two-color flow cytometric assay for the detection of Cryptosporidium in environmental water samples', Cytometry, 41, pp. 216 - 222, http://dx.doi.org/10.1002/1097-0320(20001101)41:3<216::AID-CYTO9>3.0.CO;2-R
    Journal articles | 2000
    Ferrari BC, 2000, 'An immunoglobulin G1 monoclonal antibody highly specific to the wall of Cryptosporidium oocysts', Clinical and Diagnostic Laboratory Immunology, 7, pp. 745 - 750, http://dx.doi.org/10.1128/CDLI.7.5.745-750.2000
    Journal articles | 2000
    Lechner F; Sullivan JS; Spiegel H; Nixon D; Ferrari BC; Davies AP; Borkowsky B; Pollack H; Barnes E; Dusheiko G; Klenerman P, 2000, 'Why do cytotoxic T lymphocytes fail to eliminate hepatitis C virus? Lessons from studies using major histocompatibility complex class 1 peptide tetramers', Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, pp. 1085 - 1092, http://dx.doi.org/10.1098/rstb.2000.0646
    Journal articles | 2000
    Veal DA; Deere D; Ferrari B; Piper J; Attfield PV, 2000, 'Fluorescence staining and flow cytometry for monitoring microbial cells', Journal of Immunological Methods, 243, pp. 191 - 210, http://dx.doi.org/10.1016/S0022-1759(00)00234-9
    Journal articles | 1999
    Ferrari BC; Vesey G; Weir C; Williams KL; Veal DA, 1999, 'Comparison of Cryptosporidium-specific and Giardia-specific monoclonal antibodies for monitoring water samples', Water Research, 33, pp. 1611 - 1617, http://dx.doi.org/10.1016/S0043-1354(98)00398-4
  • Preprints | 2023
    Coleine C; Albanese D; Ray AE; Delgado-Baquerizo M; Stajich JE; Williams TJ; Larsen S; Tringe S; Pennacchio C; Ferrari BC; Donati C; Selbmann L, 2023, Metagenomics untangles metabolic adaptations of Antarctic endolithic bacteria at the fringe of habitability, http://dx.doi.org/10.1101/2023.07.30.551190
    Preprints | 2021
    Ray A; Zaugg J; Benaud N; Chelliah D; Bay S; Wong HL; Leung PM; Ji M; Terauds A; Montgomery K; Greening C; Cowan D; Kong W; Williams T; Hugenholtz P; Ferrari B, 2021, Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts, http://dx.doi.org/10.21203/rs.3.rs-948000/v1
    Preprints | 2021
    Zhang E; Czechowski P; Terauds A; Wong SY; Chelliah DS; Raven M; Tanaka MM; Ferrari BC, 2021, Tracing boundaries in Eastern Antarctica: Multi-scale drivers of soil microbial communities across the hyperarid Vestfold Hills, http://dx.doi.org/10.1101/2021.09.22.461446
    Preprints | 2020
    Ji M; Kong W; Stegen J; Yue L; Wang F; Dong X; Cowan DA; Ferrari BC, 2020, Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils, http://dx.doi.org/10.21203/rs.2.19893/v1
    Preprints | 2020
    Vendl C; Nelson TM; Ferrari B; Thomas T; Rogers T, 2020, Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota, http://dx.doi.org/10.21203/rs.3.rs-17418/v1
    Preprints | 2019
    Wong SY; Charlesworth JC; Benaud N; Burns BP; Ferrari BC, 2019, Novel Quorum Sensing Activity in East Antarctic Soil Bacteria, http://dx.doi.org/10.1101/749861
    Conference Papers | 2008
    Jin D; Ferrari B; Leif RC; Yang S; Vallarino LM; Williams J; Piper J, 2008, 'UV LED excited time-gated luminescence flow cytometry: Evaluation for rare-event particle counting', in Progress in Biomedical Optics and Imaging - Proceedings of SPIE, http://dx.doi.org/10.1117/12.762077
    Conference Papers | 2005
    Ferrari BC; Bergquist P, 2005, 'Pathogen detection strategies for the environment', in Australian Water Association (ed.), Australian Water Association (AWA) Ozwater Convention and Exhibition, Australian Water Association (AWA) Ozwater Convention and Exhibition, Brisbane, Qld, presented at Australian Water Association (AWA) Ozwater Convention and Exhibition, Brisbane, Qld, 08 May 2005 - 12 May 2005
    Conference Papers | 2005
    Ferrari BC; Stoner K; Bergquist P, 2005, 'Cryptosporidium and Giardia as model pathogens in industry wastewater', in Australian Water Association (ed.), Australian Water Association (AWA) Ozwater Convention and Exhibition, AWA Speciality Conference, Canberra, Australia, presented at AWA Speciality Conference, Canberra, Australia, 22 June 2005 - 23 June 2005

  • ARC Discovery Project (DP220103430) 2022-2024
  • ARC Linkage Project (LP210200889) 2022-2024
  • Herman Slade Foundation Grant, HSF20/114 2020-2023
  • ARC LEIF, LE200100016
  • Australian Antarctic Science Grant, AAS-4592 2019- 2022
  • ARC Future Fellowship, FT170100341  2017-2021
  • Australian Antarctic Science Grant, AAS-4406 2017- 2020
  • Herman Slade Foundation Grant, HSF13/15 2015-2019

  • UNSW Sydney Vice-Chancellors Award for Excellence in Higher Degree Research Supervision 2021
  • Faculty of Science, Staff Excellence Award for Research Excellence, 2018
  • ARC Future Fellowship, 2017
  • Winner of one of three 'Outstanding Supervisor' awards, UNSW Sydney, 2015
  • Macquarie University Research Fellowship, 2002

My Research Goals

  • Determine the resilience of Antarctic soil microbial communities to global change
  • Determine the global significance of atmospheric chemosynthesis
  • To develop novel cultivation approaches for yet-to-be cultured bacteria and fungi
  • Develop new approaches for modelling environmental drivers of soil microbial communities
  • Develop site-specific ecotoxicity assessments using microbes as indicators of soil health
  • To isolate and characterise cold-adapted hydrocarbon degrading fungi and bacteria

My Research in Detail

I have built up strong partnerships across both the Biotechnology industry and government bodies in Australia. My research has real-world applications, driving remediation targets, guideline derivation and conservation efforts in Antarctica.

In Antarctic soils, microbes are the most dominant lifeform and thus they drive geochemical processes, particularly carbon and nitrogen cycling. My research is aimed at unravelling the breadth of microbial diversity and their functioning in soil. My team focuses on microbial dark matter, that is bacteria, archaea and fungi that are yet-to-be cultured or characterised. By integrating single-cell with genomics and new multivariate analyses, my group is exploring the ecology of microbes in both pristine and contaminated soils.

Through collaboration with the Australian Antarctic Division, we are using molecular tools to evaluate soil health in response to both natural and man-made disturbances, from hydrocarbon contamination through to climate induced change. My research is world-class, and of high impact, with our recent discovery of Antarctica bacteria surviving by literally living on air  published in the journal Nature. My research is challenging our understanding of the nutritional limits required to support life and opens the possibility for life elsewhere.   

Please see Ferrarilab.org for more details including information on our recent expedition to the Windmill Islands, east Antarctica.